Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15a08
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 33 0.038
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.62
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 28 1.4
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 28 1.4
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 2.5
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 26 5.8
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 5.8
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 5.8
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 5.8
SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s... 26 5.8
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 7.6
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 7.6
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 26 7.6
>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 33.5 bits (73), Expect = 0.038
Identities = 36/154 (23%), Positives = 64/154 (41%)
Frame = -3
Query: 642 FLSIPMNNADIVKEFEKFKERVLQECPNPTLEESLFIRSHKLHLTLGVMSLMDNDERIQV 463
FL++P++ I + + FK N + S F HLT+G++ + ++++ ++
Sbjct: 8 FLALPISEHYIEESLKYFKLT-----SNDPMILSGFRGPRVSHLTIGMIPVKNDEDVLKC 62
Query: 462 TNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDWAAAGLIQKL 283
+ L D I G + I LKG S+ P+ VLY D +Q
Sbjct: 63 MDFLYNKEDEI--RKSYGEKKITIDLKGTSFFGKSPQEAKVLY--ATPVDKHNGNDLQAF 118
Query: 282 GDALVDHFYRAGFMKKEFGRENIKLHVTFINTKY 181
+ L F K+ + LH T +N++Y
Sbjct: 119 CEWLKVIFTEHNLFTKD--ARPLTLHCTLLNSRY 150
>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 29.5 bits (63), Expect = 0.62
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 661 HPRRHYNHVYSAPSSLHIRLS 723
HP HY +PSSLHIRLS
Sbjct: 16 HPALHYATYRVSPSSLHIRLS 36
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 161 STSD-VSLYFVFIKVTCNFIFSLPNSFFMNP 250
S SD V+ YF+++K FIFSL N +NP
Sbjct: 460 SVSDAVATYFLYMKYVHPFIFSLCNIIPLNP 490
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 19 VWPHRVSLRKMYLCHFHNSEIVICELLEYLGSVERFSIIYGLILLRCIHVRRFSILCVYK 198
+WP R K +C +N IC G+V F++++ + IH + + ++ V
Sbjct: 1304 LWPLRTQAEKNEVCAVYNISTKICTKYIQFGNV--FNLLHAGVSYIRIHQKGYGVVGVSN 1361
Query: 199 SY 204
Y
Sbjct: 1362 KY 1363
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/76 (26%), Positives = 29/76 (38%)
Frame = -3
Query: 297 LIQKLGDALVDHFYRAGFMKKEFGRENIKLHVTFINTKYRETSDVDAPQQNQTINNRKTF 118
L+ GD + R G + EN+ LH I+ S+ P + R +
Sbjct: 82 LLYPFGDRIRGKVNRRGMNGEMLTLENLNLHFVPIDALESHLSEASFPSLRSVLCER--Y 139
Query: 117 DGSEILEKFADYDFGV 70
G E +DY FGV
Sbjct: 140 PGLVSPEPPSDYSFGV 155
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 553 CWIWTFL*YPFLEFFKLLYNI 615
C++W FL PF F L NI
Sbjct: 502 CYLWVFLYCPFTPFLVLFSNI 522
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 470 ILSSLSIKLITPNVKCSL*DLMNRDSSSVGFGHSCNTLSLNFSNSFTISALFIGIDKKCV 649
I SS ++KL + +K L+N ++ T S +++F I+ G K V
Sbjct: 665 IKSSNTVKLSSQQLKKES-VLLNCTIPEFNVSNTYFTFSSPSTDNFVIAVYQRGHSKVLV 723
Query: 650 DVCFILEDII 679
+VC L+D++
Sbjct: 724 EVCICLDDVL 733
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 335 YKTLIAFGSSFMYERPFNLIFNGTWPCNNGMTIVSLASVKRFVT 466
+ T + G S YE+P NL F T NN +V + + + +T
Sbjct: 456 FTTRMERGPSKNYEKPINLRFISTPGTNNSRYLVIVYVMNQLIT 499
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +1
Query: 19 VWPHRVSLRKMYLCHFHNSEIVICELLEYLGSVERFSIIYGLILLRCIHVRRFSILCVYK 198
+WP R S +C N E IC G V F++++ +I H + ++ V
Sbjct: 1337 LWPLRTSAELECVCSIFNIEKDICTKYVQFGHV--FNLLHSIISYVRKHQGGYGVVAVSD 1394
Query: 199 SY 204
Y
Sbjct: 1395 KY 1396
>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 113
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -3
Query: 408 HVPL-KIRLKGL--SYMNDDPKAINVLYGRVQEEDWAAAGLIQKLG 280
HV L K LK + Y N + + +L QEE+W G+ Q LG
Sbjct: 40 HVMLPKAMLKAIPTDYFNPETGTLRIL----QEEEWRGLGITQSLG 81
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 19 VWPHRVSLRKMYLCHFHNSEIVICELLEYLGSVERFSIIY-GLILLRCIHVRRFSILCVY 195
+WP R S K +C N +C G+V F++++ G +R IH + + ++ V
Sbjct: 1311 LWPLRNSSEKEEVCSVFNISKSVCSKYVQFGNV--FNLLHAGASYIR-IHQKGYGVVGVS 1367
Query: 196 KSY 204
Y
Sbjct: 1368 SKY 1370
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -3
Query: 138 INNRK-TFDG-SEILEKFADYDFGVMEVTE 55
+N RK TFD SEI + + +YDF +E T+
Sbjct: 40 VNKRKRTFDEQSEITKDYIEYDFSKIEDTK 69
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 179 LYFVFIKVTCNFIFSLPNSFF 241
LY++F+ V C F+ SL S F
Sbjct: 137 LYWIFVAVACIFVISLFYSLF 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,518,173
Number of Sequences: 5004
Number of extensions: 77293
Number of successful extensions: 214
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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