Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15a08
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0922 + 7278912-7279274,7281449-7281572,7282489-7282604,728... 59 2e-11
01_01_0097 - 741881-742977,743100-743320,743438-744156 31 1.5
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 29 4.6
10_08_0694 - 19929918-19930292,19930633-19930866 29 6.1
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190 29 6.1
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 29 6.1
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 29 6.1
07_01_0491 + 3701445-3701782,3703000-3704101 28 8.1
05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431... 28 8.1
05_06_0205 - 26364127-26365234,26366677-26367035 28 8.1
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 28 8.1
>01_01_0922 +
7278912-7279274,7281449-7281572,7282489-7282604,
7282683-7282748,7283379-7283413,7283559-7283601,
7284325-7284362,7284448-7284555,7287195-7287252,
7287862-7288003,7288215-7288426,7288544-7288778,
7288874-7288941,7290329-7290602,7291137-7291249,
7291330-7291390,7292170-7292237,7292585-7292622,
7292699-7292888
Length = 783
Score = 58.8 bits (136), Expect(2) = 2e-11
Identities = 30/93 (32%), Positives = 51/93 (54%)
Frame = -3
Query: 288 KLGDALVDHFYRAGFMKKEFGRENIKLHVTFINTKYRETSDVDAPQQNQTINNRKTFDGS 109
+L + + D F ++G + + R+ +KLHVT +N ++R++ + NQ +FD
Sbjct: 683 QLREVITDAFVKSGLVLERDARQELKLHVTIMNVRHRKSK-----RWNQ---RNDSFDAR 734
Query: 108 EILEKFADYDFGVMEVTEIHLSQRHTMGPDGYY 10
I K+ ++D+G + EIHLSQR GYY
Sbjct: 735 NIFRKYGEHDWGEYLIPEIHLSQRFKFDERGYY 767
Score = 39.1 bits (87), Expect(2) = 4e-08
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = -3
Query: 279 DALVDHFYR-AGFMKKEFGRENIKLHVTFINTKYRETSDVDAPQQNQTINNRKTFDGSEI 103
+AL++H + + + +KLH T +N ++R+ DA +FD +I
Sbjct: 226 EALINHVFNISNLAPTSDEKRELKLHATVMNARFRKGYCPDA-----------SFDARKI 274
Query: 102 LEKFADYDFGVMEVTEIHLSQ 40
EK+A++++G + EIHL Q
Sbjct: 275 FEKYAEHEWGEYLIPEIHLCQ 295
Score = 36.3 bits (80), Expect(2) = 4e-08
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Frame = -3
Query: 648 THFLSIPMN-NADIVKEFEKFKERVLQ----ECPNPTLEESLFIRSHKLHLTLGVMSLMD 484
THF+S+P+ + +V + +FK +L + ++ES+F LHLT+ +M +
Sbjct: 131 THFISLPLGIHPQLVDKLNEFKRSILTSNEYKAAGFRIDESIFAIPESLHLTV-LMLELK 189
Query: 483 NDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGL 376
+ + +++L D ++ L + P+ I+L+GL
Sbjct: 190 GENIAKASSVLQSVSDKLMEAL--KNRPISIQLRGL 223
Score = 27.9 bits (59), Expect(2) = 2e-11
Identities = 12/59 (20%), Positives = 32/59 (54%)
Frame = -3
Query: 564 PNPTLEESLFIRSHKLHLTLGVMSLMDNDERIQVTNLLTEARDTIVIPLLQGHVPLKIR 388
P+ +++S+FI+ HLT+ ++ L + D + +++L ++ L + +++R
Sbjct: 627 PDFGIDKSIFIKPKTFHLTVLMLKLWNKDRIAKASDVLQSVSSQVMEALENRPISIQLR 685
>01_01_0097 - 741881-742977,743100-743320,743438-744156
Length = 678
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = -2
Query: 310 GGRRPNTEAG*CSCRSFL*SWVHEKGIRKRKYKIARNFYKHKV*RN---VGRGCTSTKSN 140
GGRR + + S +S+ SWV+ + ++++ +IA F H++ + VG C KS+
Sbjct: 565 GGRRNSKQNMSSSSQSYYPSWVYNQLVQQKMGEIANAFNMHELEKKLCVVGLHCIQMKSH 624
Query: 139 HK 134
+
Sbjct: 625 DR 626
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -3
Query: 627 MNNADIVKEFEKFKERVLQECPN-PTLEESLFIRSHKLHLTLGVMSLMDNDERIQVTNLL 451
+NN D + K ++ C N +LEES ++ H + +L ++ ++D ++ I+ L
Sbjct: 1075 VNNMDFESKETKLISVIISNCSNLISLEESFLLQEHHIR-SLRILRIVDCEKLIRAPLLF 1133
Query: 450 TE 445
+E
Sbjct: 1134 SE 1135
>10_08_0694 - 19929918-19930292,19930633-19930866
Length = 202
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 357 PKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKEFGRENI 214
P I VL G V+E+ AAG + L + F + K+ FG +NI
Sbjct: 80 PPGIRVLRGSVEEDKDKAAGEMSTALQHLEEAFVKCSQGKQYFGGDNI 127
>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
Length = 1218
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 640 KMRRCLFHPRRHYNHVYSAPSSLHIRLSWS*NDNVPSLIVFWNFYVRFCVSFNSAYN 810
K RCLF H +++ + H W + + I WN+ R CV+ + +N
Sbjct: 81 KTHRCLFTLHGHLDYIRTV--QFHHEYPWIVSASDDQTIRIWNWQSRTCVAVLTGHN 135
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 640 KMRRCLFHPRRHYNHVYSAPSSLHIRLSWS*NDNVPSLIVFWNFYVRFCVSFNSAYN 810
K RCLF H +++ + H W + + I WN+ R CV+ + +N
Sbjct: 81 KTHRCLFTLHGHLDYIRTV--QFHHECPWIVSASDDQTIRIWNWQSRTCVAVLTGHN 135
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 640 KMRRCLFHPRRHYNHVYSAPSSLHIRLSWS*NDNVPSLIVFWNFYVRFCVSFNSAYN 810
K RCLF H +++ + H W + + I WN+ R CV+ + +N
Sbjct: 81 KTHRCLFTLHGHLDYIRTV--QFHHEYPWIVSASDDQTIRIWNWQSRTCVAVLTGHN 135
>07_01_0491 + 3701445-3701782,3703000-3704101
Length = 479
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 542 DSSSVGFGHSCNTLSLNFSNSFTISALF 625
D + +GFG SCN + N + S+ +A F
Sbjct: 390 DCTPLGFGSSCNGMDTNGNASYAFNAYF 417
>05_07_0064 +
27440520-27440942,27442387-27442998,27443109-27443175,
27443271-27443362,27443493-27443708,27443869-27444006,
27444325-27444474
Length = 565
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 452 KRFVTCILSSLSIKLITPNVKCSL*DLM 535
KRFV C LS +KL+ +KC++ D++
Sbjct: 324 KRFVHCTLSLDDVKLVKNAMKCTVNDVL 351
>05_06_0205 - 26364127-26365234,26366677-26367035
Length = 488
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 536 NRDSSSVGFGHSCNTLSLNFSNSFTISALFIGIDK 640
N D + +G+G SCN LS + + S+ + F +D+
Sbjct: 397 NADCTPLGYGSSCNNLSHDGNISYAFNIYFQTMDQ 431
>01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 336 YGRVQEEDWAAAGLIQKLGDALVDHFYRAG 247
Y ++++ WA AGL+ LG+++V YR G
Sbjct: 1149 YVSLEDDPWAVAGLVLGLGNSVVS-LYRLG 1177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,627,588
Number of Sequences: 37544
Number of extensions: 454925
Number of successful extensions: 994
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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