Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15a08
(839 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118329-1|AAM48358.1| 352|Drosophila melanogaster LD21545p pro... 136 5e-32
AE013599-993|AAF58859.1| 352|Drosophila melanogaster CG12129-PA... 136 5e-32
AY058407-1|AAL13636.1| 397|Drosophila melanogaster GH18144p pro... 33 0.37
AE014297-448|AAN13374.1| 397|Drosophila melanogaster CG31367-PA... 33 0.37
BT025915-1|ABG02159.1| 227|Drosophila melanogaster IP09412p pro... 30 3.4
AE014296-3450|AAF51663.1| 276|Drosophila melanogaster CG10587-P... 30 3.4
AY118896-1|AAM50756.1| 1689|Drosophila melanogaster LD05834p pro... 30 4.5
AF041382-1|AAB96783.1| 1690|Drosophila melanogaster microtubule ... 30 4.5
AE014134-2837|AAN10987.1| 1652|Drosophila melanogaster CG5020-PC... 30 4.5
AE014134-2834|AAO41206.2| 1677|Drosophila melanogaster CG5020-PD... 30 4.5
AE014134-2833|AAF53605.2| 1689|Drosophila melanogaster CG5020-PB... 30 4.5
AE014134-2832|AAF53604.1| 1690|Drosophila melanogaster CG5020-PA... 30 4.5
AE014298-1761|AAN09307.1| 618|Drosophila melanogaster CG32651-P... 29 6.0
AE014298-1477|AAF46612.1| 931|Drosophila melanogaster CG2111-PA... 29 7.9
>AY118329-1|AAM48358.1| 352|Drosophila melanogaster LD21545p
protein.
Length = 352
Score = 136 bits (328), Expect = 5e-32
Identities = 84/264 (31%), Positives = 137/264 (51%), Gaps = 3/264 (1%)
Frame = -3
Query: 789 DTKTDIKIPK-HDQTGDVVILGPAESNVKAAXXXXXXXXXXXXMKQTSTHFLSIPMNNAD 613
+T+T+I +P+ +D++ +V I S V AA K THFL++ +N+ +
Sbjct: 104 ETRTEIFVPRPNDRSNEVTIKAKQRSQVCAALRQIHHLVASLRKKMKPTHFLAVALNSGE 163
Query: 612 IVKEFEKFKERVLQECPNPTLEESLFIRSHKLHLTLGVMSLMDNDERIQVTNLLTEARDT 433
+ + F + K+ +L E P +++ LF +HLTLGV L+D+ ER + L R
Sbjct: 164 VKERFMELKKCIL-EAELPGIDKELFTPECCIHLTLGVYVLLDDIERQEALKNLESCRR- 221
Query: 432 IVIPLLQG-HVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFY 256
LL G +P +I++KGL MNDDP + +LY R++ D +QK D + HF
Sbjct: 222 ----LLDGLKIPFQIKVKGLEIMNDDPSSTRILYARIESPD------LQKFADQCLAHFQ 271
Query: 255 RAGFMKKE-FGRENIKLHVTFINTKYRETSDVDAPQQNQTINNRKTFDGSEILEKFADYD 79
+ RE+IKLH+T +N +YR N+ + +FD EIL++F D+D
Sbjct: 272 TTALCATDNIERESIKLHMTVMNNRYR----------NKANKSGNSFDAREILKRFGDFD 321
Query: 78 FGVMEVTEIHLSQRHTMGPDGYYQ 7
FGV + +HL ++ D +Y+
Sbjct: 322 FGVAQCQAVHLCVLNSRSEDEFYK 345
>AE013599-993|AAF58859.1| 352|Drosophila melanogaster CG12129-PA
protein.
Length = 352
Score = 136 bits (328), Expect = 5e-32
Identities = 84/264 (31%), Positives = 137/264 (51%), Gaps = 3/264 (1%)
Frame = -3
Query: 789 DTKTDIKIPK-HDQTGDVVILGPAESNVKAAXXXXXXXXXXXXMKQTSTHFLSIPMNNAD 613
+T+T+I +P+ +D++ +V I S V AA K THFL++ +N+ +
Sbjct: 104 ETRTEIFVPRPNDRSNEVTIKAKQRSQVCAALRQIHHLVASLRKKMKPTHFLAVALNSGE 163
Query: 612 IVKEFEKFKERVLQECPNPTLEESLFIRSHKLHLTLGVMSLMDNDERIQVTNLLTEARDT 433
+ + F + K+ +L E P +++ LF +HLTLGV L+D+ ER + L R
Sbjct: 164 VKERFMELKKCIL-EAELPGIDKELFTPECCIHLTLGVYVLLDDIERQEALKNLESCRR- 221
Query: 432 IVIPLLQG-HVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFY 256
LL G +P +I++KGL MNDDP + +LY R++ D +QK D + HF
Sbjct: 222 ----LLDGLKIPFQIKVKGLEIMNDDPSSTRILYARIESPD------LQKFADQCLAHFQ 271
Query: 255 RAGFMKKE-FGRENIKLHVTFINTKYRETSDVDAPQQNQTINNRKTFDGSEILEKFADYD 79
+ RE+IKLH+T +N +YR N+ + +FD EIL++F D+D
Sbjct: 272 TTALCATDNIERESIKLHMTVMNNRYR----------NKANKSGNSFDAREILKRFGDFD 321
Query: 78 FGVMEVTEIHLSQRHTMGPDGYYQ 7
FGV + +HL ++ D +Y+
Sbjct: 322 FGVAQCQAVHLCVLNSRSEDEFYK 345
>AY058407-1|AAL13636.1| 397|Drosophila melanogaster GH18144p
protein.
Length = 397
Score = 33.5 bits (73), Expect = 0.37
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = -3
Query: 579 VLQECPNPTLEESLFIRSHKLHLTLGVMSLMDNDERIQVTNLLTEARDTIVIPLLQ 412
+LQEC T + S I+ + HL + ++ ND+R V + + E R+TIV+ L+
Sbjct: 322 LLQECKFITHKSSDLIKENPNHLK-EIQDILKNDKRYLVLDHMEEERNTIVLGFLE 376
>AE014297-448|AAN13374.1| 397|Drosophila melanogaster CG31367-PA
protein.
Length = 397
Score = 33.5 bits (73), Expect = 0.37
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = -3
Query: 579 VLQECPNPTLEESLFIRSHKLHLTLGVMSLMDNDERIQVTNLLTEARDTIVIPLLQ 412
+LQEC T + S I+ + HL + ++ ND+R V + + E R+TIV+ L+
Sbjct: 322 LLQECKFITHKSSDLIKENPNHLK-EIQDILKNDKRYLVLDHMEEERNTIVLGFLE 376
>BT025915-1|ABG02159.1| 227|Drosophila melanogaster IP09412p
protein.
Length = 227
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -3
Query: 351 AINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKEFGRENIKLHVTFINTK 184
A + GRV+ DW A G KL D + + EF +++ + V + K
Sbjct: 87 AAHCFLGRVKISDWLAVGGASKLNDRGIQRQVKEVIKSAEFREDDMNMDVAILRLK 142
>AE014296-3450|AAF51663.1| 276|Drosophila melanogaster CG10587-PA
protein.
Length = 276
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -3
Query: 351 AINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKEFGRENIKLHVTFINTK 184
A + GRV+ DW A G KL D + + EF +++ + V + K
Sbjct: 85 AAHCFLGRVKISDWLAVGGASKLNDRGIQRQVKEVIKSAEFREDDMNMDVAILRLK 140
>AY118896-1|AAM50756.1| 1689|Drosophila melanogaster LD05834p protein.
Length = 1689
Score = 29.9 bits (64), Expect = 4.5
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Frame = -3
Query: 588 KERVLQECPNPTLEESLFIRSHKLHLTLGVMS-LMDNDERIQVTNLLTEARDTIVIPLLQ 412
KE+ +E EE ++ L L+ G + + D ER+++TN + ++ + Q
Sbjct: 1048 KEKSFEESIKNLQEEVTKAKTENLELSTGTQTTIKDLQERLEITNAELQHKEKMASEDAQ 1107
Query: 411 GHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKE 232
LK ++ + N + A N V E + + + +H + M+ +
Sbjct: 1108 KIADLKTLVEAIQVANANISATNAELSTVLE--------VLQAEKSETNHIFELFEMEAD 1159
Query: 231 FGRENIKLHVTFINTKYRET 172
E + VT I + +ET
Sbjct: 1160 MNSERLIEKVTGIKEELKET 1179
>AF041382-1|AAB96783.1| 1690|Drosophila melanogaster microtubule
binding protein D-CLIP-190 protein.
Length = 1690
Score = 29.9 bits (64), Expect = 4.5
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Frame = -3
Query: 588 KERVLQECPNPTLEESLFIRSHKLHLTLGVMS-LMDNDERIQVTNLLTEARDTIVIPLLQ 412
KE+ +E EE ++ L L+ G + + D ER+++TN + ++ + Q
Sbjct: 1049 KEKSFEESIKNLQEEVTKAKTENLELSTGTQTTIKDLQERLEITNAELQHKEKMASEDAQ 1108
Query: 411 GHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKE 232
LK ++ + N + A N V E + + + +H + M+ +
Sbjct: 1109 KIADLKTLVEAIQVANANISATNAELSTVLE--------VLQAEKSETNHIFELFEMEAD 1160
Query: 231 FGRENIKLHVTFINTKYRET 172
E + VT I + +ET
Sbjct: 1161 MNSERLIEKVTGIKEELKET 1180
>AE014134-2837|AAN10987.1| 1652|Drosophila melanogaster CG5020-PC,
isoform C protein.
Length = 1652
Score = 29.9 bits (64), Expect = 4.5
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Frame = -3
Query: 588 KERVLQECPNPTLEESLFIRSHKLHLTLGVMS-LMDNDERIQVTNLLTEARDTIVIPLLQ 412
KE+ +E EE ++ L L+ G + + D ER+++TN + ++ + Q
Sbjct: 1011 KEKSFEESIKNLQEEVTKAKTENLELSTGTQTTIKDLQERLEITNAELQHKEKMASEDAQ 1070
Query: 411 GHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKE 232
LK ++ + N + A N V E + + + +H + M+ +
Sbjct: 1071 KIADLKTLVEAIQVANANISATNAELSTVLE--------VLQAEKSETNHIFELFEMEAD 1122
Query: 231 FGRENIKLHVTFINTKYRET 172
E + VT I + +ET
Sbjct: 1123 MNSERLIEKVTGIKEELKET 1142
>AE014134-2834|AAO41206.2| 1677|Drosophila melanogaster CG5020-PD,
isoform D protein.
Length = 1677
Score = 29.9 bits (64), Expect = 4.5
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Frame = -3
Query: 588 KERVLQECPNPTLEESLFIRSHKLHLTLGVMS-LMDNDERIQVTNLLTEARDTIVIPLLQ 412
KE+ +E EE ++ L L+ G + + D ER+++TN + ++ + Q
Sbjct: 1036 KEKSFEESIKNLQEEVTKAKTENLELSTGTQTTIKDLQERLEITNAELQHKEKMASEDAQ 1095
Query: 411 GHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKE 232
LK ++ + N + A N V E + + + +H + M+ +
Sbjct: 1096 KIADLKTLVEAIQVANANISATNAELSTVLE--------VLQAEKSETNHIFELFEMEAD 1147
Query: 231 FGRENIKLHVTFINTKYRET 172
E + VT I + +ET
Sbjct: 1148 MNSERLIEKVTGIKEELKET 1167
>AE014134-2833|AAF53605.2| 1689|Drosophila melanogaster CG5020-PB,
isoform B protein.
Length = 1689
Score = 29.9 bits (64), Expect = 4.5
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Frame = -3
Query: 588 KERVLQECPNPTLEESLFIRSHKLHLTLGVMS-LMDNDERIQVTNLLTEARDTIVIPLLQ 412
KE+ +E EE ++ L L+ G + + D ER+++TN + ++ + Q
Sbjct: 1048 KEKSFEESIKNLQEEVTKAKTENLELSTGTQTTIKDLQERLEITNAELQHKEKMASEDAQ 1107
Query: 411 GHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKE 232
LK ++ + N + A N V E + + + +H + M+ +
Sbjct: 1108 KIADLKTLVEAIQVANANISATNAELSTVLE--------VLQAEKSETNHIFELFEMEAD 1159
Query: 231 FGRENIKLHVTFINTKYRET 172
E + VT I + +ET
Sbjct: 1160 MNSERLIEKVTGIKEELKET 1179
>AE014134-2832|AAF53604.1| 1690|Drosophila melanogaster CG5020-PA,
isoform A protein.
Length = 1690
Score = 29.9 bits (64), Expect = 4.5
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Frame = -3
Query: 588 KERVLQECPNPTLEESLFIRSHKLHLTLGVMS-LMDNDERIQVTNLLTEARDTIVIPLLQ 412
KE+ +E EE ++ L L+ G + + D ER+++TN + ++ + Q
Sbjct: 1049 KEKSFEESIKNLQEEVTKAKTENLELSTGTQTTIKDLQERLEITNAELQHKEKMASEDAQ 1108
Query: 411 GHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDWAAAGLIQKLGDALVDHFYRAGFMKKE 232
LK ++ + N + A N V E + + + +H + M+ +
Sbjct: 1109 KIADLKTLVEAIQVANANISATNAELSTVLE--------VLQAEKSETNHIFELFEMEAD 1160
Query: 231 FGRENIKLHVTFINTKYRET 172
E + VT I + +ET
Sbjct: 1161 MNSERLIEKVTGIKEELKET 1180
>AE014298-1761|AAN09307.1| 618|Drosophila melanogaster CG32651-PA
protein.
Length = 618
Score = 29.5 bits (63), Expect = 6.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 588 KERVLQECPNPTLEESLFIRSHKLHLTL 505
K ++L +CP+ +ESLF+ + HLT+
Sbjct: 429 KSQLLAKCPDQNCQESLFMYNISFHLTI 456
>AE014298-1477|AAF46612.1| 931|Drosophila melanogaster CG2111-PA
protein.
Length = 931
Score = 29.1 bits (62), Expect = 7.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 129 DYLWFDFVEVHPRPTFLYTLCL*K 200
DY+W FVE HP T+L + K
Sbjct: 208 DYVWTQFVESHPMQTYLVAFMISK 231
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,767,140
Number of Sequences: 53049
Number of extensions: 798276
Number of successful extensions: 2218
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2212
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -