Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15a08
(839 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical pr... 73 3e-13
Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z79753-3|CAB02088.1| 377|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical pr... 28 7.2
U50300-6|AAC48109.1| 642|Caenorhabditis elegans Hypothetical pr... 28 7.2
U00055-11|AAN65307.1| 290|Caenorhabditis elegans Hypothetical p... 28 9.5
U00055-9|AAL06042.1| 309|Caenorhabditis elegans Hypothetical pr... 28 9.5
>U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical
protein C23H3.3 protein.
Length = 378
Score = 72.9 bits (171), Expect = 3e-13
Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 5/204 (2%)
Frame = -3
Query: 645 HFLSIPMNNADIVKEFEKFKERVLQE--CPNPTLEESLFIRSHKLHLTLGVMSLMDNDER 472
HF+++P + ++ + F FK+ V++ + LF + +LHLTL V + D D
Sbjct: 178 HFVALPCDQHEVQENFNIFKQMVMESDHFDSSCKNSQLFTKPTRLHLTLSVARIFD-DMD 236
Query: 471 IQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDWAAAGLI 292
+Q E + I ++ PL ++G+ MNDDP + VLY +V+ + +
Sbjct: 237 LQKAVGAFEILEK-EIRQIKDSKPLIADIQGIDMMNDDPSQVFVLYAKVKGDK------V 289
Query: 291 QKLGDALVDHFYRAGFMKK---EFGRENIKLHVTFINTKYRETSDVDAPQQNQTINNRKT 121
Q++ + + G K + G + +KLH+T +N++Y S+ + +
Sbjct: 290 QEVANYVNRRLIELGVSSKNEHDNGSDAVKLHMTLMNSRYVTQSEKSGKSKEAAL----- 344
Query: 120 FDGSEILEKFADYDFGVMEVTEIH 49
FD ++LE D FG E+ E++
Sbjct: 345 FDAKQVLEDLKDSYFGTFELKEVN 368
>Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical
protein F43A11.3 protein.
Length = 319
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +1
Query: 61 HFHNSEIVICELLEYL----GSVERFSIIYGLILLRCIHVRRFSILCVYKSYVQFYIFSS 228
++ NS VI + ++ G + F+II I L F+++C +++V FYI S
Sbjct: 10 NYQNSVNVISAVFNFVFGIFGVICNFNIIS--IFLTSTERTSFNLICFSRAFVNFYILLS 67
Query: 229 EFLFH 243
FLF+
Sbjct: 68 SFLFY 72
>Z79753-3|CAB02088.1| 377|Caenorhabditis elegans Hypothetical
protein F20G2.3 protein.
Length = 377
Score = 29.9 bits (64), Expect = 2.4
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = -3
Query: 498 MSLMDNDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMND--DPKAINVLYGRV 325
MS+ ++D R+ + N L EA + P L LKG Y D PK IN L R
Sbjct: 1 MSISESD-RVAI-NELREAVKEHLTPYYDTDFNLLRWLKGHDYKMDVIKPKLINHLLFR- 57
Query: 324 QEEDWAAAGLIQKLGDALVDHFYRAG 247
+ DW L K D V H ++ G
Sbjct: 58 -KSDWDLDSLADKPRDHPVHHHWKTG 82
>Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical
protein H12I19.5b protein.
Length = 596
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 103 YLGSVERFSIIYGLILLRCIHVRRFSILCVYKSYVQFYI 219
YLG V++F ++ G ++ C+ +R+ SI YKS QF +
Sbjct: 32 YLG-VDQFFVLSGFLM--CMLLRKSSISASYKSNFQFIV 67
>Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical
protein H12I19.5a protein.
Length = 607
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 103 YLGSVERFSIIYGLILLRCIHVRRFSILCVYKSYVQFYI 219
YLG V++F ++ G ++ C+ +R+ SI YKS QF +
Sbjct: 32 YLG-VDQFFVLSGFLM--CMLLRKSSISASYKSNFQFIV 67
>U50300-6|AAC48109.1| 642|Caenorhabditis elegans Hypothetical
protein R03H4.1 protein.
Length = 642
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 58 CHFHNSEIVICELLEYLGSVERFSIIYGLILLRCIHVRRFSILCVYKSYVQFYIFSSEFL 237
C +HN++I+ ++L Y+G + S + L+ I + + + Y I SS L
Sbjct: 274 CEYHNNQILKSKILGYIGDI---SYVMYLVHWPIITIFLSNTVKSYIFCTSLTILSSVVL 330
Query: 238 FH--EPSSIEMIYKSITQLLY 294
H E +++ +KS+ LL+
Sbjct: 331 HHTFEKLYLKLNWKSLICLLF 351
>U00055-11|AAN65307.1| 290|Caenorhabditis elegans Hypothetical
protein R02F2.1d protein.
Length = 290
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 440 LASVKRFVTCILSSLSIKLITPNVKCSL*DLMNRDSS 550
L ++ RFV C+LS L + P++K L D + DS+
Sbjct: 138 LPNLNRFVECLLSELDAAFLLPSIKKHL-DFLLCDST 173
>U00055-9|AAL06042.1| 309|Caenorhabditis elegans Hypothetical
protein R02F2.1a protein.
Length = 309
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 440 LASVKRFVTCILSSLSIKLITPNVKCSL*DLMNRDSS 550
L ++ RFV C+LS L + P++K L D + DS+
Sbjct: 157 LPNLNRFVECLLSELDAAFLLPSIKKHL-DFLLCDST 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,236,738
Number of Sequences: 27780
Number of extensions: 421319
Number of successful extensions: 1109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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