Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a08
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   2.0  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   2.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.1  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 337 QNINRLWIIVHVRETLQSDLQRYVAL*QWNDNCIPR 444
           +NI   W   ++  TL ++    + L  W +N  PR
Sbjct: 166 KNITTPWDYYYIYHTLVAEQSYGLTLPSWTNNIFPR 201


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 337 QNINRLWIIVHVRETLQSDLQRYVAL*QWNDNCIPR 444
           +NI   W   ++  TL ++    + L  W +N  PR
Sbjct: 181 KNITTPWDYYYIYHTLVAEQSYGLTLPSWTNNIFPR 216


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 768 IPKHDQTGDVVILG 727
           IP HD T DV+++G
Sbjct: 413 IPLHDATRDVILVG 426


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +1

Query: 121 RFSIIYGLILLRC 159
           +FS++YG +++ C
Sbjct: 702 QFSVLYGFVIIEC 714


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/58 (20%), Positives = 28/58 (48%)
 Frame = -3

Query: 483 NDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDW 310
           +D+ I    LL+   D  ++P +QG + + + +  LS  + D  ++      + ++ W
Sbjct: 60  SDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQW 117


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/58 (20%), Positives = 28/58 (48%)
 Frame = -3

Query: 483 NDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDW 310
           +D+ I    LL+   D  ++P +QG + + + +  LS  + D  ++      + ++ W
Sbjct: 60  SDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQW 117


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/58 (20%), Positives = 28/58 (48%)
 Frame = -3

Query: 483 NDERIQVTNLLTEARDTIVIPLLQGHVPLKIRLKGLSYMNDDPKAINVLYGRVQEEDW 310
           +D+ I    LL+   D  ++P +QG + + + +  LS  + D  ++      + ++ W
Sbjct: 60  SDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQW 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,073
Number of Sequences: 438
Number of extensions: 5627
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)