Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a06
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   287   2e-78
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.92 
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    28   2.1  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   3.7  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   6.5  
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    26   6.5  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    26   8.5  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  287 bits (703), Expect = 2e-78
 Identities = 133/282 (47%), Positives = 177/282 (62%), Gaps = 1/282 (0%)
 Frame = -2

Query: 911 TFIFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEVEEPWFGFNQE 732
           T + P  +Y+DPFRRG++ILVLA  Y  +  P   NHR  C  + EK   +E WFG  QE
Sbjct: 78  TLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHADKETWFGIEQE 137

Query: 731 FILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLNGINPG 552
           + +     RP GWP GGFP P GP+YC +G+ ++ ARD++EA Y+ CLYAG+ ++GIN  
Sbjct: 138 YTMLDYYDRPFGWPKGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAE 197

Query: 551 TVPSQWNFQVGPSPGIRGADDLWMARYILSRLAEEYGTVASFEPQP-TADWPGNGTFVYF 375
            +PSQW +QVGP  GI   D LWM+R++L R+AE++G   SF P+P   DW G G     
Sbjct: 198 VMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIAEDFGVKISFHPKPILGDWNGAGCHTNV 257

Query: 374 STKDMREDDGILVIERAIDKLARRHGAHINEYDANNGADNVRRLVGKNGMPHIRDFTAGV 195
           STKD R + GI  IE  ++K A+RH  HI  Y    G DN  RL G++    I  FT GV
Sbjct: 258 STKDTRAEGGIKAIESYLEKFAKRHKEHIAVY----GDDNDLRLTGRHETGSIDKFTYGV 313

Query: 194 ANRSCCVRIPRQVSEDKRGYLEDRRPAANADPYRIISIMLKT 69
           A+R   VRIPR V+ +  GY EDRRPA++ DPY +  I+ +T
Sbjct: 314 ADRGASVRIPRSVAMNGCGYFEDRRPASSIDPYLVTGIITET 355


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 896  EVIYHDPFRRGN-HILVLADTYQ--FNYQPTSSNHRKNCTI 783
            ++  H  F + N ++L LAD     FNY  T+S+HR N  I
Sbjct: 4570 QMFSHFTFEQSNTNVLALADASMKCFNYANTASHHRSNSDI 4610


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -2

Query: 701 LGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLNGINPGTVP 543
           LG   G   A P P++C+I  +K      MEA    CL   VQL        P
Sbjct: 257 LGQECGTLVAIPTPHHCSIDYEK------MEALIETCLQRSVQLGITGKNVTP 303


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 612 GSLLQVLFIRWSSVKWNKSGNGALPVELPGRSKSWYSW 499
           G  L++  ++ S  KW  S + +LP  L  R  S +SW
Sbjct: 598 GENLKITTLQSSGRKWLDSLSSSLPSSLLNRGSSTHSW 635


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 490 IYGWLGTFYHDSPRSTARWPPSNHSPQRIGRETVPLCTFPPR 365
           + G  G     SP STAR   +   P  +G +T  L   PP+
Sbjct: 29  VNGTNGGMKQVSPVSTARTSIARRPPSTVGSQTGSLVNAPPK 70


>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 294 GTVSTRQLIYSPLDH*YAVIFSHVLGGKVHKGTVSRP-IRCGLWFEGGHRAV 446
           G VS+R ++   LDH   +IF+++   K  K   S P      W+E   R V
Sbjct: 69  GRVSSRLVLLKELDHRGFIIFTNLGTSKKAKDLKSNPYASLSFWWEPLQRQV 120


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 891 DLPRPV*TWKPHISVSRHVPVQLSAHIVKSPEKL 790
           +LP+P+  + PH     +   +L A I  +P+KL
Sbjct: 20  NLPKPLPAYYPHPGSPLYADKELYARIANAPKKL 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,957,714
Number of Sequences: 5004
Number of extensions: 87447
Number of successful extensions: 244
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)