Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15a06
(912 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 295 4e-80
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 285 4e-77
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 265 3e-71
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 263 2e-70
05_07_0140 - 27982037-27983794 34 0.14
10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745... 33 0.24
06_02_0237 + 13341469-13342259,13342839-13343223,13343314-133434... 31 1.3
09_04_0402 - 17304828-17305622 31 1.7
12_02_1277 + 27497773-27500241 30 2.9
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 29 3.9
05_03_0586 + 15782645-15782721,15782781-15783405 29 3.9
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 29 5.1
02_04_0470 - 23183925-23184743,23184929-23185153 29 5.1
12_01_1094 + 11419208-11419419,11420188-11420222,11420398-114204... 29 6.8
03_06_0036 + 31208993-31209391,31209616-31209693,31209881-312099... 29 6.8
09_06_0256 + 21887666-21888670 28 9.0
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505... 28 9.0
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 295 bits (723), Expect = 4e-80
Identities = 138/285 (48%), Positives = 182/285 (63%), Gaps = 4/285 (1%)
Frame = -2
Query: 905 IFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEV--EEPWFGFNQE 732
++P+ I+ DPFR+GN+ILV+ D Y +P +N R N I EV EEPW+G QE
Sbjct: 72 LYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQE 131
Query: 731 FILTSSD-GRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLNGINP 555
+ L D PLGWPVGGFP P GPYYC IG+DK RD++++ Y+ CLYAG+ ++GIN
Sbjct: 132 YTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGING 191
Query: 554 GTVPSQWNFQVGPSPGIRGADDLWMARYILSRLAEEYGTVASFEPQP-TADWPGNGTFVY 378
+P QW FQVGPS GI D +W+ARYIL R+ E G V SF+P+P DW G G
Sbjct: 192 EVMPGQWEFQVGPSVGISAGDQVWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTN 251
Query: 377 FSTKDMREDDGILVIERAIDKLARRHGAHINEYDANNGADNVRRLVGKNGMPHIRDFTAG 198
+STK MR D G +I+ AI+KL RH HI+ Y G N RRL G++ I F+ G
Sbjct: 252 YSTKSMRNDGGYEIIKSAIEKLKLRHKEHISAY----GEGNERRLTGRHETADINTFSWG 307
Query: 197 VANRSCCVRIPRQVSEDKRGYLEDRRPAANADPYRIISIMLKTCI 63
VANR VR+ R+ ++ +GY EDRRPA+N DPY + S++ +T I
Sbjct: 308 VANRGASVRVGRETEQNGKGYFEDRRPASNMDPYIVTSMIAETTI 352
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 285 bits (698), Expect = 4e-77
Identities = 135/300 (45%), Positives = 183/300 (61%), Gaps = 4/300 (1%)
Frame = -2
Query: 905 IFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEV--EEPWFGFNQE 732
+ P+ I+ DPFR+G +ILV+ D Y N +P +N+R N I +V EEPW+G QE
Sbjct: 99 LHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQE 158
Query: 731 FILTSSD-GRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLNGINP 555
+ L PLGWP+GG+P P GPYYCA G+DK RD+++A Y+ CL+AG+ ++GIN
Sbjct: 159 YTLLQKHINWPLGWPLGGYPGPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISGINA 218
Query: 554 GTVPSQWNFQVGPSPGIRGADDLWMARYILSRLAEEYGTVASFEPQP-TADWPGNGTFVY 378
+P QW FQ+GP G+ D +W+ARYIL R+ E G V SF+P+P DW G G
Sbjct: 219 EVMPGQWEFQIGPVVGVSAGDHVWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTN 278
Query: 377 FSTKDMREDDGILVIERAIDKLARRHGAHINEYDANNGADNVRRLVGKNGMPHIRDFTAG 198
+STK MR + G VI++AI KL RH HI Y G N RRL G++ I +F G
Sbjct: 279 YSTKSMRSNGGYEVIKKAIKKLGMRHREHIAAY----GDGNERRLTGRHETADINNFVWG 334
Query: 197 VANRSCCVRIPRQVSEDKRGYLEDRRPAANADPYRIISIMLKTCIFDE*SLHEIHSKKQG 18
VANR VR+ R +D +GY EDRRPA+N DPY + +++ +T I E S H + G
Sbjct: 335 VANRGASVRVGRDTEKDGKGYFEDRRPASNMDPYLVTAMIAETTILWEPSHGHGHGQSNG 394
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 265 bits (650), Expect = 3e-71
Identities = 131/295 (44%), Positives = 180/295 (61%), Gaps = 8/295 (2%)
Frame = -2
Query: 905 IFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEV--EEPWFGFNQE 732
++P+ I+ DPFR GN+ILV+ DTY +P +N R + +V + PWFG QE
Sbjct: 871 LYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQE 930
Query: 731 FILTSSDGR-PLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLNGINP 555
+ L D PLGWPVGG+P P GPYYCA+GSDK RD+ +A Y+ CLYAG+ ++G N
Sbjct: 931 YTLLQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISGTNG 990
Query: 554 GTVPSQWNFQVGPSPGIRGADDLWMARYILSRLAEEYGTVASFEPQP-TAD----WPGNG 390
+P QW +QVGPS GI D +W++RYIL R+ E+ G V + +P+P AD +
Sbjct: 991 EVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQADSVICFVIRL 1050
Query: 389 TFVYFSTKDMREDDGILVIERAIDKLARRHGAHINEYDANNGADNVRRLVGKNGMPHIRD 210
+ TK MRED G VI++AI L+ RH HI+ Y G N RRL G + I +
Sbjct: 1051 RLILQITKSMREDGGFEVIKKAILNLSLRHDLHISAY----GEGNERRLTGLHETASIDN 1106
Query: 209 FTAGVANRSCCVRIPRQVSEDKRGYLEDRRPAANADPYRIISIMLKTCIFDE*SL 45
F+ GVANR C +R+ R +GYLEDRRPA+N DPY + +++ +T I E +L
Sbjct: 1107 FSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYVVTALLAETTILWEPTL 1161
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 263 bits (644), Expect = 2e-70
Identities = 128/284 (45%), Positives = 174/284 (61%), Gaps = 3/284 (1%)
Frame = -2
Query: 905 IFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEV--EEPWFGFNQE 732
++P+ I+ DPFRRG++ILV+ D Y +P +N R + I +V E PW+G QE
Sbjct: 72 LYPQAIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQE 131
Query: 731 FILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLNGINPG 552
+ L D + WP+G PGPYYCA G++K RD+++A Y+ C+YAG+ ++GIN
Sbjct: 132 YTLLQKD---VNWPLGW----PGPYYCAAGAEKAFGRDIVDAHYKACIYAGINISGINGE 184
Query: 551 TVPSQWNFQVGPSPGIRGADDLWMARYILSRLAEEYGTVASFEPQP-TADWPGNGTFVYF 375
+P QW FQVGPS GI AD +W+ARYIL R+ E G V S +P+P DW G G F
Sbjct: 185 VMPGQWEFQVGPSVGIAAADQVWVARYILERVTEVAGVVLSLDPKPIPGDWNGAGAHTNF 244
Query: 374 STKDMREDDGILVIERAIDKLARRHGAHINEYDANNGADNVRRLVGKNGMPHIRDFTAGV 195
STK MRE G VI++AIDKLA RH HI Y G N RRL G++ I F GV
Sbjct: 245 STKSMREPGGYEVIKKAIDKLALRHKEHIAAY----GEGNERRLTGRHETADINTFKWGV 300
Query: 194 ANRSCCVRIPRQVSEDKRGYLEDRRPAANADPYRIISIMLKTCI 63
ANR +R+ R ++ +GY EDRRPA+N DPY + ++ +T +
Sbjct: 301 ANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIAETTL 344
>05_07_0140 - 27982037-27983794
Length = 585
Score = 34.3 bits (75), Expect = 0.14
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Frame = +1
Query: 295 APCRRANLSIARSITNMP--SSSLMSLVEKYTKVPFPGQSAVGCGSKEATVPYSS----- 453
AP + A SI P S + + +T+ P G +A+ S+++ ++S
Sbjct: 23 APASLGGGAAAASIPFAPFSRSDKLGRIADWTRNP-AGPAALAAASRDSVFDFTSVDDSL 81
Query: 454 --ASRDKMYRAIHKSSAPRIPGLGPTWKFHWEGTVP 555
A+ D +R + PR P GP W+F+ +P
Sbjct: 82 AAAAEDSSFRLVDAKPPPRHPRFGPKWRFNQRPQLP 117
>10_08_0249 +
16172811-16172987,16174048-16174299,16174426-16174505,
16174616-16174701,16174799-16174904,16174987-16175143,
16175220-16175315,16175797-16175845,16175946-16176205,
16176327-16176499,16176692-16176812,16176923-16176975,
16177088-16177217,16177371-16177516,16177887-16178075,
16178317-16178549,16178784-16178932,16179042-16179104
Length = 839
Score = 33.5 bits (73), Expect = 0.24
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = -2
Query: 497 ADDLWMARYILSRLAEEYGTVASFEPQPTADWPGNGTFVYFS 372
AD L AR I+ +A ++G +A+F P+P + G+G+ V+ S
Sbjct: 603 ADKLIYAREIIKSVARKHGLLATFLPKPDLNDIGSGSHVHLS 644
>06_02_0237 +
13341469-13342259,13342839-13343223,13343314-13343427,
13343517-13344011
Length = 594
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = -2
Query: 455 AEEYGTVASFEP-QPTADWPGN-----GTFVYFSTKDMREDDGILVIERAIDKLARRH 300
A EYG S P QP AD+P N G +V K ++ ++ I V ER +A RH
Sbjct: 326 AGEYGLGVSAVPLQPEADYPANAAYMDGYYVDADGKPVKSENIICVFERYAGDIAWRH 383
>09_04_0402 - 17304828-17305622
Length = 264
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 448 SSASRDKMYRAIHKSSAPRIPGLGPTWK 531
SS +D+ Y+A K+S+P GLG +W+
Sbjct: 97 SSKEKDREYKAKSKASSPFFSGLGGSWR 124
>12_02_1277 + 27497773-27500241
Length = 822
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = -2
Query: 350 DGILVIERAIDKLARRHGAHINEYDANNGADNVRRLV 240
DG+ V++ + ++ ++ G ++ Y ++GA VRR++
Sbjct: 507 DGVTVVDEEVSEMRKQIGEALDAYQGDDGAVRVRRVL 543
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 707 RPLGWPVGGFPAPPGPYY 654
RPLG P GGFP P YY
Sbjct: 300 RPLGPPGGGFPVEPFAYY 317
>05_03_0586 + 15782645-15782721,15782781-15783405
Length = 233
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 266 GADNVRRLV-GKNGMPHIRDFTAGVANRSCCVRIPR 162
GA ++ RL G+PH+++ G+ R C V+I R
Sbjct: 185 GAPSLLRLAYSSRGVPHVKERDTGLVGRFCLVKIGR 220
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 391 PFPGQSAVGCGSKEATVPYSS--ASRDKMYRAIHKSSAPRIPGL 516
P GQ A + EAT P+ + K Y I K++ PR+PG+
Sbjct: 739 PVEGQEAALVAAGEATAPFRTWKGIATKGYSLIIKANNPRLPGV 782
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -1
Query: 570 KWNKSGNGALPVELPGRSKSWYSWSG*FMDG--SVHFITTRRGVRHGGLLRTTAHSGLAG 397
+W+ + ALP R S SW G +DG + T+RR RH L+ A S L+
Sbjct: 172 RWSPAKARALPPPPSLRYPSRSSWDGADLDGPTAASTTTSRRRRRHHRLVPPPAASPLSN 231
Query: 396 KRYLC 382
++ C
Sbjct: 232 RQRHC 236
>12_01_1094 +
11419208-11419419,11420188-11420222,11420398-11420438,
11421849-11421938,11422556-11422630,11427609-11427965
Length = 269
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 232 MECHTSGISLQVWLIGVVASGYLGKFPRTSGAI*KIGDPQ 113
++CH S ++W+IG +G +G FP +G IG +
Sbjct: 156 VDCHYSLPDDKLWVIGGTTAGTIGYFPVRAGLEGAIGSAE 195
>03_06_0036 +
31208993-31209391,31209616-31209693,31209881-31209946,
31211556-31211621,31211815-31211865,31212635-31212928
Length = 317
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 331 SITNMPSSSLMSLVEKYTKVPFPGQSAVGCGSKEATVPYSSASRDKMYRAIHKSSAPRIP 510
S+++M SS + + F + + GC ++AT P ++ + +K R + RI
Sbjct: 111 SVSSMSSSPTATAISSSKSPAFKKKGSRGCDQRKATAPAAATTTNKRPRVRRERLGERII 170
Query: 511 GL 516
L
Sbjct: 171 AL 172
>09_06_0256 + 21887666-21888670
Length = 334
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/89 (23%), Positives = 31/89 (34%)
Frame = +1
Query: 268 LLASYSLMWAPCRRANLSIARSITNMPSSSLMSLVEKYTKVPFPGQSAVGCGSKEATVPY 447
LL +Y W RA L + + S +E PG S ++
Sbjct: 34 LLEAYEAKWLLRNRAKLKWSDWVDIAHEVSAHCAMENAAATGKPGSSTAKTPNQCKNKIE 93
Query: 448 SSASRDKMYRAIHKSSAPRIPGLGPTWKF 534
S R + A + P G GP+W+F
Sbjct: 94 SMKKRYRAESAAAARAGPAAAGAGPSWRF 122
>08_02_0743 -
20647440-20647927,20647997-20648426,20650127-20650570,
20650639-20650692
Length = 471
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -1
Query: 627 CERSYGSLLQV-LFIRWSSVKWNKSGNGAL---PVELPGRSKSWYS 502
C +SYGS+LQV L + S +K + G+L P+ L G S W S
Sbjct: 342 CSKSYGSMLQVALSLAISGLKARQKSIGSLSKAPLLLVGWSTFWPS 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,120,737
Number of Sequences: 37544
Number of extensions: 653233
Number of successful extensions: 1795
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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