Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15a06
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical... 303 8e-83
AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical... 303 8e-83
Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical pr... 296 1e-80
Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical pr... 292 3e-79
Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical pr... 281 6e-76
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 248 3e-66
U55371-2|AAL02524.1| 402|Caenorhabditis elegans Hypothetical pr... 31 1.5
U55371-1|AAL02525.1| 432|Caenorhabditis elegans Hypothetical pr... 31 1.5
AY919615-1|AAY16564.1| 432|Caenorhabditis elegans FLP-2 recepto... 31 1.5
AY919614-1|AAY16563.1| 402|Caenorhabditis elegans FLP-2 recepto... 31 1.5
U00033-1|AAC48292.3| 731|Caenorhabditis elegans Hypothetical pr... 30 2.6
AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical... 29 4.6
Z82051-2|CAB04816.1| 237|Caenorhabditis elegans Hypothetical pr... 29 6.1
U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helical... 29 6.1
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 29 6.1
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 28 8.1
AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical ... 28 8.1
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 28 8.1
>AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical
protein Y105C5B.28b protein.
Length = 385
Score = 303 bits (745), Expect = 8e-83
Identities = 134/281 (47%), Positives = 181/281 (64%), Gaps = 1/281 (0%)
Frame = -2
Query: 908 FIFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEVEEPWFGFNQEF 729
++ P IY DPFR+G + LV+ +TY +PT++N+R+ C + EK + PWFG QE+
Sbjct: 80 YLKPVAIYPDPFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFGMEQEY 139
Query: 728 ILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLNGINPGT 549
L DG P GWP GFP P GPYYC +G++K+ RD++EA YR CLYAG+Q++G N
Sbjct: 140 TLLDIDGHPFGWPKNGFPGPQGPYYCGVGANKVYGRDIVEAHYRACLYAGIQISGTNAEV 199
Query: 548 VPSQWNFQVGPSPGIRGADDLWMARYILSRLAEEYGTVASFEPQP-TADWPGNGTFVYFS 372
+P QW FQVGP GI+ D LW+ARY+L R+AEE+G +ASF+ +P DW G G FS
Sbjct: 200 MPGQWEFQVGPCEGIQMGDQLWVARYLLQRVAEEFGVIASFDCKPIKGDWNGAGCHTNFS 259
Query: 371 TKDMREDDGILVIERAIDKLARRHGAHINEYDANNGADNVRRLVGKNGMPHIRDFTAGVA 192
T MR GI I AI+KL+ H HI YD + G DN RRL G + I F+ GVA
Sbjct: 260 TDKMRNPGGIDEIMSAINKLSLVHPQHIAYYDPHGGKDNERRLTGLHETASIDKFSYGVA 319
Query: 191 NRSCCVRIPRQVSEDKRGYLEDRRPAANADPYRIISIMLKT 69
+R+ +RIPR +D GY EDRRP++N DPY + +++T
Sbjct: 320 SRASSIRIPRSTDDDGYGYFEDRRPSSNCDPYTVTGALVRT 360
>AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical
protein Y105C5B.28a protein.
Length = 388
Score = 303 bits (745), Expect = 8e-83
Identities = 134/281 (47%), Positives = 181/281 (64%), Gaps = 1/281 (0%)
Frame = -2
Query: 908 FIFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEVEEPWFGFNQEF 729
++ P IY DPFR+G + LV+ +TY +PT++N+R+ C + EK + PWFG QE+
Sbjct: 83 YLKPVAIYPDPFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFGMEQEY 142
Query: 728 ILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLNGINPGT 549
L DG P GWP GFP P GPYYC +G++K+ RD++EA YR CLYAG+Q++G N
Sbjct: 143 TLLDIDGHPFGWPKNGFPGPQGPYYCGVGANKVYGRDIVEAHYRACLYAGIQISGTNAEV 202
Query: 548 VPSQWNFQVGPSPGIRGADDLWMARYILSRLAEEYGTVASFEPQP-TADWPGNGTFVYFS 372
+P QW FQVGP GI+ D LW+ARY+L R+AEE+G +ASF+ +P DW G G FS
Sbjct: 203 MPGQWEFQVGPCEGIQMGDQLWVARYLLQRVAEEFGVIASFDCKPIKGDWNGAGCHTNFS 262
Query: 371 TKDMREDDGILVIERAIDKLARRHGAHINEYDANNGADNVRRLVGKNGMPHIRDFTAGVA 192
T MR GI I AI+KL+ H HI YD + G DN RRL G + I F+ GVA
Sbjct: 263 TDKMRNPGGIDEIMSAINKLSLVHPQHIAYYDPHGGKDNERRLTGLHETASIDKFSYGVA 322
Query: 191 NRSCCVRIPRQVSEDKRGYLEDRRPAANADPYRIISIMLKT 69
+R+ +RIPR +D GY EDRRP++N DPY + +++T
Sbjct: 323 SRASSIRIPRSTDDDGYGYFEDRRPSSNCDPYTVTGALVRT 363
>Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical
protein F26D10.10 protein.
Length = 369
Score = 296 bits (727), Expect = 1e-80
Identities = 124/288 (43%), Positives = 185/288 (64%), Gaps = 3/288 (1%)
Frame = -2
Query: 908 FIFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEVEEPWFGFNQEF 729
++ P ++ DPF +G+++LV+ +T +PT++NHR+NC I +K PWFG QE+
Sbjct: 82 YLRPVAVFPDPFLQGHNVLVMCETLDETMKPTATNHRQNCAAIMKKVAEHHPWFGMEQEY 141
Query: 728 ILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLNGINPGT 549
++ D PLGWP G+PAP G YYC +G+D+ R+++E YR CL+AG+ + G N
Sbjct: 142 LIVDRDEHPLGWPKHGYPAPQGKYYCGVGADRAFGREVVETHYRACLHAGINIFGTNAEV 201
Query: 548 VPSQWNFQVGPSPGIRGADDLWMARYILSRLAEEYGTVASFEPQP---TADWPGNGTFVY 378
P QW FQ+G GI D LWMARYIL R+AE++G S +P+P DW G G
Sbjct: 202 TPGQWEFQIGTCEGIDMGDQLWMARYILHRVAEQFGVCVSLDPKPKVTMGDWNGAGCHTN 261
Query: 377 FSTKDMREDDGILVIERAIDKLARRHGAHINEYDANNGADNVRRLVGKNGMPHIRDFTAG 198
FST +MR +G+ I A+ L R H ++ YD N G DN+RRL G++ F+ G
Sbjct: 262 FSTIEMRRPNGLNAIFEAMKGLERTHSEAMSVYDPNGGRDNLRRLTGRHETSQADKFSWG 321
Query: 197 VANRSCCVRIPRQVSEDKRGYLEDRRPAANADPYRIISIMLKTCIFDE 54
+ANR+C +RIPRQV+++ +GYLEDRRP++N DPY + ++++K+C+ +
Sbjct: 322 IANRACSIRIPRQVADETKGYLEDRRPSSNCDPYLVTAMIVKSCLLSD 369
>Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical
protein C28D4.3 protein.
Length = 368
Score = 292 bits (716), Expect = 3e-79
Identities = 126/287 (43%), Positives = 183/287 (63%), Gaps = 3/287 (1%)
Frame = -2
Query: 908 FIFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEVEEPWFGFNQEF 729
++ P ++ DPF G ++LV+ DT +PT++NHR+ C + +K ++PWFG QE+
Sbjct: 82 YLRPVAVFPDPFLGGLNVLVMCDTLDHEMKPTATNHRQMCAELMKKVSDQQPWFGMEQEY 141
Query: 728 ILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLNGINPGT 549
++ D PLGWP G+PAP G YYC IG+D+ R+++E YR CL+AG+ + G N
Sbjct: 142 LIVDRDEHPLGWPKHGYPAPQGKYYCGIGADRAFGREVVETHYRACLHAGITIFGSNAEV 201
Query: 548 VPSQWNFQVGPSPGIRGADDLWMARYILSRLAEEYGTVASFEPQP---TADWPGNGTFVY 378
P QW FQ+G GI D LWMARYIL R+AE++G S +P+P DW G G
Sbjct: 202 TPGQWEFQIGTCLGIEMGDQLWMARYILHRVAEQFGVCVSLDPKPRVTMGDWNGAGCHTN 261
Query: 377 FSTKDMREDDGILVIERAIDKLARRHGAHINEYDANNGADNVRRLVGKNGMPHIRDFTAG 198
FST DMR DG+ I A++ L + H + YD N G DN+RRL G++ F+ G
Sbjct: 262 FSTIDMRRPDGLETIIAAMEGLKKTHSEAMKVYDPNGGHDNLRRLTGRHETSQADQFSWG 321
Query: 197 VANRSCCVRIPRQVSEDKRGYLEDRRPAANADPYRIISIMLKTCIFD 57
+ANR+C VRIPRQV+++ RGYLEDRRP++N DPY + ++++K+ + +
Sbjct: 322 IANRACSVRIPRQVADEGRGYLEDRRPSSNCDPYLVTAMIVKSVLIN 368
>Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical
protein K03H1.1 protein.
Length = 367
Score = 281 bits (688), Expect = 6e-76
Identities = 124/286 (43%), Positives = 176/286 (61%), Gaps = 3/286 (1%)
Frame = -2
Query: 908 FIFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEVEEPWFGFNQEF 729
++ P Y DPF G + LV+ DT QPT+++HR+ C I + PWFG QE+
Sbjct: 82 YLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIMHEIRDTRPWFGMEQEY 141
Query: 728 ILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLNGINPGT 549
++ D PLGWP GFP P G YYC++G+D+ R+++E YR CL+AG+ + G N
Sbjct: 142 LIVDRDEHPLGWPKHGFPDPQGKYYCSVGADRAFGREVVETHYRACLHAGLNIFGTNAEV 201
Query: 548 VPSQWNFQVGPSPGIRGADDLWMARYILSRLAEEYGTVASFEPQP---TADWPGNGTFVY 378
P QW FQ+G GI D LWM+RYIL R+AE++G S +P+P DW G G
Sbjct: 202 TPGQWEFQIGTCEGIDMGDQLWMSRYILHRVAEQFGVCVSLDPKPKVTMGDWNGAGCHTN 261
Query: 377 FSTKDMREDDGILVIERAIDKLARRHGAHINEYDANNGADNVRRLVGKNGMPHIRDFTAG 198
FST +MR GI IE A+ L R H + YD + G DN+RRL G++ F+ G
Sbjct: 262 FSTAEMRAPGGIAAIEAAMTGLKRTHLEAMKVYDPHGGEDNLRRLTGRHETSSADKFSWG 321
Query: 197 VANRSCCVRIPRQVSEDKRGYLEDRRPAANADPYRIISIMLKTCIF 60
VANR C +RIPRQV+ +++GYLEDRRP++N DPY++ +++ ++ +F
Sbjct: 322 VANRGCSIRIPRQVAAERKGYLEDRRPSSNCDPYQVTAMIAQSILF 367
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 248 bits (608), Expect = 3e-66
Identities = 116/253 (45%), Positives = 159/253 (62%), Gaps = 5/253 (1%)
Frame = -2
Query: 908 FIFPEVIYHDPFRRGNHILVLADTYQFNYQPTSSNHRKNCTIICEKGEVEEPWFGFNQEF 729
+I P +Y DPFR G + + L +T + +P +N R+ C EK + +EPWFG QEF
Sbjct: 83 YIRPIALYRDPFRPGPNKIALCETLTHDNKPHPTNTRQQCVDNMEKAKDQEPWFGMEQEF 142
Query: 728 ILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLNGINPGT 549
L +D P WPV GFPAP GPYYC +GSD++ R ++EA YR C+YAG++++G N +
Sbjct: 143 TLLGADKHPYNWPVNGFPAPQGPYYCGVGSDRVFGRHILEAHYRACMYAGIKISGSNVES 202
Query: 548 VPSQWNFQVGPSPGIRGADDLWMARYILSRLAEEYGTVASFEPQPT-ADWPGNGTFVYFS 372
+PSQ+ +QVGP GI D LW++RYIL R+ E+YG V S +P+P +W G G + FS
Sbjct: 203 MPSQFEYQVGPCEGIEMGDQLWVSRYILHRICEDYGVVCSLDPKPVLGEWSGAGCHLNFS 262
Query: 371 TKDMR---ED-DGILVIERAIDKLARRHGAHINEYDANNGADNVRRLVGKNGMPHIRDFT 204
T MR ED G IE A+ KL++ H HI YD + G DN RRL+G N + F+
Sbjct: 263 TNVMRTPCEDGTGWKAIEEAVVKLSKVHMHHIAYYDPHGGRDNERRLIGANQTETVDAFS 322
Query: 203 AGVANRSCCVRIP 165
+GVA+R VRIP
Sbjct: 323 SGVADREASVRIP 335
>U55371-2|AAL02524.1| 402|Caenorhabditis elegans Hypothetical
protein T19F4.1a protein.
Length = 402
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 169 ILTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSL-MWA 297
IL + + + +V L+C + FF SL TLS P+ +L +WA
Sbjct: 27 ILFSRPHMRSSSVNVLLCALSFFDFSLLTLSIPIFVIPNLDLWA 70
>U55371-1|AAL02525.1| 432|Caenorhabditis elegans Hypothetical
protein T19F4.1b protein.
Length = 432
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 169 ILTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSL-MWA 297
IL + + + +V L+C + FF SL TLS P+ +L +WA
Sbjct: 27 ILFSRPHMRSSSVNVLLCALSFFDFSLLTLSIPIFVIPNLDLWA 70
>AY919615-1|AAY16564.1| 432|Caenorhabditis elegans FLP-2 receptor
protein.
Length = 432
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 169 ILTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSL-MWA 297
IL + + + +V L+C + FF SL TLS P+ +L +WA
Sbjct: 27 ILFSRPHMRSSSVNVLLCALSFFDFSLLTLSIPIFVIPNLDLWA 70
>AY919614-1|AAY16563.1| 402|Caenorhabditis elegans FLP-2 receptor
protein.
Length = 402
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 169 ILTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSL-MWA 297
IL + + + +V L+C + FF SL TLS P+ +L +WA
Sbjct: 27 ILFSRPHMRSSSVNVLLCALSFFDFSLLTLSIPIFVIPNLDLWA 70
>U00033-1|AAC48292.3| 731|Caenorhabditis elegans Hypothetical
protein F37C12.7 protein.
Length = 731
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = -2
Query: 425 EPQPTA-DWPGNGTFVYFSTKDM---REDDGILVIERAIDKLARRHGAHIN 285
+P+ TA D+ VYF+T D+ R+D +L+I+R D + +HG +++
Sbjct: 550 QPEKTAEDFITYKGKVYFATGDIGQKRDDGSLLIIDRKKDLVKLQHGEYVS 600
>AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical
protein Y47D3A.22 protein.
Length = 765
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +3
Query: 420 WFEGGHRAVLLGES**NVPSHP*IIRSTNTRTWTDLEVPLGGHRSRIYSI*LNSSV*TAP 599
+F G R +L+ E N P+H + S N WT + L GH I SI N TA
Sbjct: 17 YFTPGDR-ILISE---NHPNHAQRLNSYNNVAWTKTHLALLGHIGYIESI--NEHRHTAN 70
Query: 600 VKGFHKISRN 629
V+ ++ + +N
Sbjct: 71 VRVYYAVPQN 80
>Z82051-2|CAB04816.1| 237|Caenorhabditis elegans Hypothetical
protein T23D5.3 protein.
Length = 237
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +1
Query: 211 SLMCGIPFFPTSLRTLSAPLLASYSLMWAPCRRANLSIARSITNMPSSSLMSLV----EK 378
S G P T+ T++AP + ++ + A L + + +P + + E+
Sbjct: 127 SATTGSPSAATTAATVAAPPTTTAAVSILTLKSAFLYVTKPFQPLPCQTCTPFMNFMDER 186
Query: 379 YTKVPFPGQSAVGCGS 426
YT P G +A GC +
Sbjct: 187 YTCTPTTGMTATGCST 202
>U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform c
protein.
Length = 1310
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +3
Query: 33 MNFVKRSLIKNTSFEHN*YDAVRVCVSCGSPIF*IAPLVLGNLPRYPDATTPISHTCSEI 212
M F+K +++ N N + VC++ G + + + GNL ++ +TP + SE+
Sbjct: 842 MMFMKEAILLNNLDHPNIVKELGVCITPGQELILLEYMEGGNLLKFLQKSTPNEYQSSEL 901
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +3
Query: 33 MNFVKRSLIKNTSFEHN*YDAVRVCVSCGSPIF*IAPLVLGNLPRYPDATTPISHTCSEI 212
M F+K +++ N N + VC++ G + + + GNL ++ +TP + SE+
Sbjct: 1988 MMFMKEAILLNNLDHPNIVKELGVCITPGQELILLEYMEGGNLLKFLQKSTPNEYQSSEL 2047
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 28.3 bits (60), Expect = 8.1
Identities = 25/82 (30%), Positives = 34/82 (41%)
Frame = +1
Query: 172 LTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSLMWAPCRRANLSIARSITNMPS 351
+++ + T V S+M + PTS P +S M P R A+ S AR T PS
Sbjct: 194 ISKPAAVTTKKVGSMMTQSVYTPTS-----RPATSSRLTMKQPARGASTSAARPNTATPS 248
Query: 352 SSLMSLVEKYTKVPFPGQSAVG 417
SS K P P + G
Sbjct: 249 SSNNRRSMDQRKPPMPRKLPFG 270
>AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical
protein M01B12.4c protein.
Length = 678
Score = 28.3 bits (60), Expect = 8.1
Identities = 25/82 (30%), Positives = 34/82 (41%)
Frame = +1
Query: 172 LTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSLMWAPCRRANLSIARSITNMPS 351
+++ + T V S+M + PTS P +S M P R A+ S AR T PS
Sbjct: 184 ISKPAAVTTKKVGSMMTQSVYTPTS-----RPATSSRLTMKQPARGASTSAARPNTATPS 238
Query: 352 SSLMSLVEKYTKVPFPGQSAVG 417
SS K P P + G
Sbjct: 239 SSNNRRSMDQRKPPMPRKLPFG 260
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 28.3 bits (60), Expect = 8.1
Identities = 25/82 (30%), Positives = 34/82 (41%)
Frame = +1
Query: 172 LTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSLMWAPCRRANLSIARSITNMPS 351
+++ + T V S+M + PTS P +S M P R A+ S AR T PS
Sbjct: 184 ISKPAAVTTKKVGSMMTQSVYTPTS-----RPATSSRLTMKQPARGASTSAARPNTATPS 238
Query: 352 SSLMSLVEKYTKVPFPGQSAVG 417
SS K P P + G
Sbjct: 239 SSNNRRSMDQRKPPMPRKLPFG 260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,136,179
Number of Sequences: 27780
Number of extensions: 513967
Number of successful extensions: 1326
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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