Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a04
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    30   0.45 
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.2  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   7.3  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.6  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   9.6  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -3

Query: 784  QELSFLHLKICRTWKMKLNKEEAFQMKI-NTLESELLTKQKHTQQHIADLDRKVAQERRA 608
            +EL +  ++I   W+MKL K +  ++KI +T  S L       +  + ++ +++    + 
Sbjct: 886  KELQYYAVRIQSLWRMKLAKRQLTELKIESTKASHLKQVSYRLESRLFEISKQLDNSEQE 945

Query: 607  LQEIREAV 584
              + RE +
Sbjct: 946  NNKFRERI 953


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
 Frame = -3

Query: 802 VKSLDAQELSFLHLK--ICRTWKMKLNKEEAFQM----------KINTLESELLTKQKHT 659
           V+ L+A     LH K  IC+  K  L K+ A+QM          K+++LE   LTK K  
Sbjct: 21  VEPLEANLFGKLHNKLLICKAKKENLEKKLAYQMMYSKLLKSLPKLSSLEENKLTKLKAP 80

Query: 658 QQHIADLDRKVAQERRALQE 599
            + + +  +++ + R+   E
Sbjct: 81  IEDMENTKKELEEIRKQSTE 100


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 593 GSRIQEQPEVTFYESEDGFRHQNFSTSGIH 504
           G R+  + ++  + SEDG R+   S  G+H
Sbjct: 445 GDRLLSENQMDLFVSEDGGRNWTLSRDGMH 474


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 204 CLCVISRVKLESRCMKISQCN 142
           CL  +S  +L   C ++ QCN
Sbjct: 525 CLVCLSNFELNDECRRLKQCN 545


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 745 WKMKLNKEEA-FQMKINTLESELLTKQKHTQQHIADLDRK 629
           +K+KL  EE+ +++++  LES+L T+ +  +      +RK
Sbjct: 198 FKIKLETEESNWKVRLQVLESKLATQDRKLRMQKKSTERK 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,646
Number of Sequences: 5004
Number of extensions: 56732
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)