Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a04
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574           29   3.3  
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014...    29   4.4  
01_02_0048 - 10626467-10627498,10628522-10628617                       29   5.8  
03_06_0231 + 32522898-32523524                                         28   7.6  
02_01_0407 - 2963907-2964063,2965158-2965311,2965427-2968527,296...    28   7.6  

>01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574
          Length = 212

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 538 FGIKTSAPAESITNNNLDCTCKIGCG 461
           FG   +AP  ++  +N +C C  GCG
Sbjct: 177 FGAPLAAPPANVQPDNGNCNCSFGCG 202


>03_02_0712 -
           10600147-10600196,10600257-10600378,10600993-10601489,
           10601663-10601851,10601936-10602099,10602193-10602446,
           10602535-10602691,10602830-10602995,10603121-10603227,
           10603305-10603478,10603594-10603689,10603781-10603862,
           10603948-10604058,10604253-10604309,10604638-10604709,
           10604799-10605041,10605195-10605341,10605381-10605616,
           10605745-10605865
          Length = 1014

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 600 SCNALLSCATLRSRSAMCCCVCFCLVNSSDSNVLIFIWKASSLFNFIFHVRH 755
           +C  ++    +RSR A+C C    +VN++  +VL     A S F +  +VR+
Sbjct: 97  ACAHVVFVNLIRSRCAVCHCSVMVVVNTAADSVLQPDGAALSAFQYFENVRN 148


>01_02_0048 - 10626467-10627498,10628522-10628617
          Length = 375

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 597 ISCNALLSCATLRSRSAMCCCVCFCLV 677
           + C    SC  L  RS  CCC CF L+
Sbjct: 71  VHCRLCSSCLLLEYRSFYCCC-CFLLL 96


>03_06_0231 + 32522898-32523524
          Length = 208

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 600 SCNALLSCATLRSRSAMCCCVCFCLVNSSDSNVLIFIWKASSLFN 734
           +  A  + AT +  +  C C   CL N  D +VL  + +   LF+
Sbjct: 122 AAKAASAAATKKGGATTCSCCSICLDNYGDGDVLRMLPECGHLFH 166


>02_01_0407 -
           2963907-2964063,2965158-2965311,2965427-2968527,
           2968684-2968697
          Length = 1141

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 365 VALSPGSTRSRLNAQQCSGNVSGRSSLAFSDNSASNLTSAVQII 496
           +AL   S +      +  GN+   S L+ S+NS +N+T  +QI+
Sbjct: 374 IALRMSSNKFHGQLPKGIGNLKSLSFLSISNNSLTNITDTLQIL 417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,671
Number of Sequences: 37544
Number of extensions: 343982
Number of successful extensions: 977
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)