Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15a04
(810 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK055217-1|BAB70876.1| 688|Homo sapiens protein ( Homo sapiens ... 36 0.17
D10667-1|BAA36971.1| 1052|Homo sapiens smooth muscle myosin heav... 33 0.92
BC104906-1|AAI04907.1| 1938|Homo sapiens myosin, heavy chain 11,... 33 0.92
BC101677-1|AAI01678.1| 1938|Homo sapiens myosin, heavy chain 11,... 33 0.92
AY520817-1|AAS98911.1| 1945|Homo sapiens smooth muscle myosin he... 33 0.92
AY520816-1|AAS98910.1| 1979|Homo sapiens smooth muscle myosin he... 33 0.92
AF001548-1|AAC31665.1| 1857|Homo sapiens Myosin heavy chain (MHY... 33 0.92
AB020673-1|BAA74889.2| 1984|Homo sapiens KIAA0866 protein protein. 33 0.92
U78313-1|AAB39748.1| 246|Homo sapiens myogenic repressor I-mf p... 30 8.6
BC007836-1|AAH07836.1| 246|Homo sapiens MyoD family inhibitor p... 30 8.6
AL035588-17|CAI22456.1| 231|Homo sapiens MyoD family inhibitor ... 30 8.6
AL035588-16|CAD92607.1| 185|Homo sapiens MyoD family inhibitor ... 30 8.6
AL035588-15|CAB54148.1| 246|Homo sapiens MyoD family inhibitor ... 30 8.6
AL035588-14|CAO72132.1| 213|Homo sapiens MyoD family inhibitor ... 30 8.6
>AK055217-1|BAB70876.1| 688|Homo sapiens protein ( Homo sapiens
cDNA FLJ30655 fis, clone DFNES2000268, weakly similar to
MYOSIN HEAVY CHAIN, STRIATED MUSCLE. ).
Length = 688
Score = 35.9 bits (79), Expect = 0.17
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = -3
Query: 760 KICRTWKMKLNK-EEAFQMKINTLESELLTKQKHTQQHIADLD---RKVAQERRALQEIR 593
K WK + K E+ +++IN L+SEL ++ HTQ+ ++ L+ KVA+ + + E +
Sbjct: 586 KAANRWKEETKKLTESAEIRINNLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQ 645
Query: 592 E 590
E
Sbjct: 646 E 646
>D10667-1|BAA36971.1| 1052|Homo sapiens smooth muscle myosin heavy
chain protein.
Length = 1052
Score = 33.5 bits (73), Expect = 0.92
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -3
Query: 712 QMKINTLESELLTKQKHTQQHIADLDRKVAQERRALQEIRE 590
Q +I L+ +L K++ Q +A LD ++AQ+ AL++IRE
Sbjct: 189 QAQIAELKMQLAKKEEELQAALARLDDEIAQKNNALKKIRE 229
>BC104906-1|AAI04907.1| 1938|Homo sapiens myosin, heavy chain 11,
smooth muscle protein.
Length = 1938
Score = 33.5 bits (73), Expect = 0.92
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -3
Query: 712 QMKINTLESELLTKQKHTQQHIADLDRKVAQERRALQEIRE 590
Q +I L+ +L K++ Q +A LD ++AQ+ AL++IRE
Sbjct: 1075 QAQIAELKMQLAKKEEELQAALARLDDEIAQKNNALKKIRE 1115
>BC101677-1|AAI01678.1| 1938|Homo sapiens myosin, heavy chain 11,
smooth muscle protein.
Length = 1938
Score = 33.5 bits (73), Expect = 0.92
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -3
Query: 712 QMKINTLESELLTKQKHTQQHIADLDRKVAQERRALQEIRE 590
Q +I L+ +L K++ Q +A LD ++AQ+ AL++IRE
Sbjct: 1075 QAQIAELKMQLAKKEEELQAALARLDDEIAQKNNALKKIRE 1115
>AY520817-1|AAS98911.1| 1945|Homo sapiens smooth muscle myosin heavy
chain isoform SM2 protein.
Length = 1945
Score = 33.5 bits (73), Expect = 0.92
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -3
Query: 712 QMKINTLESELLTKQKHTQQHIADLDRKVAQERRALQEIRE 590
Q +I L+ +L K++ Q +A LD ++AQ+ AL++IRE
Sbjct: 1082 QAQIAELKMQLAKKEEELQAALARLDDEIAQKNNALKKIRE 1122
>AY520816-1|AAS98910.1| 1979|Homo sapiens smooth muscle myosin heavy
chain isoform SM1 protein.
Length = 1979
Score = 33.5 bits (73), Expect = 0.92
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -3
Query: 712 QMKINTLESELLTKQKHTQQHIADLDRKVAQERRALQEIRE 590
Q +I L+ +L K++ Q +A LD ++AQ+ AL++IRE
Sbjct: 1082 QAQIAELKMQLAKKEEELQAALARLDDEIAQKNNALKKIRE 1122
>AF001548-1|AAC31665.1| 1857|Homo sapiens Myosin heavy chain (MHY11)
(5'partial) protein.
Length = 1857
Score = 33.5 bits (73), Expect = 0.92
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -3
Query: 712 QMKINTLESELLTKQKHTQQHIADLDRKVAQERRALQEIRE 590
Q +I L+ +L K++ Q +A LD ++AQ+ AL++IRE
Sbjct: 960 QAQIAELKMQLAKKEEELQAALARLDDEIAQKNNALKKIRE 1000
>AB020673-1|BAA74889.2| 1984|Homo sapiens KIAA0866 protein protein.
Length = 1984
Score = 33.5 bits (73), Expect = 0.92
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -3
Query: 712 QMKINTLESELLTKQKHTQQHIADLDRKVAQERRALQEIRE 590
Q +I L+ +L K++ Q +A LD ++AQ+ AL++IRE
Sbjct: 1087 QAQIAELKMQLAKKEEELQAALARLDDEIAQKNNALKKIRE 1127
>U78313-1|AAB39748.1| 246|Homo sapiens myogenic repressor I-mf
protein.
Length = 246
Score = 30.3 bits (65), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 594 LISCNALLSCATLRSRSAMCCCVCFCLVNSSD 689
L CN +L CAT S S+ C+C C S +
Sbjct: 177 LTLCNIVLDCATCGSCSSEDSCLCCCCCGSGE 208
>BC007836-1|AAH07836.1| 246|Homo sapiens MyoD family inhibitor
protein.
Length = 246
Score = 30.3 bits (65), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 594 LISCNALLSCATLRSRSAMCCCVCFCLVNSSD 689
L CN +L CAT S S+ C+C C S +
Sbjct: 177 LTLCNIVLDCATCGSCSSEDSCLCCCCCGSGE 208
>AL035588-17|CAI22456.1| 231|Homo sapiens MyoD family inhibitor
protein.
Length = 231
Score = 30.3 bits (65), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 594 LISCNALLSCATLRSRSAMCCCVCFCLVNSSD 689
L CN +L CAT S S+ C+C C S +
Sbjct: 177 LTLCNIVLDCATCGSCSSEDSCLCCCCCGSGE 208
>AL035588-16|CAD92607.1| 185|Homo sapiens MyoD family inhibitor
protein.
Length = 185
Score = 30.3 bits (65), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 594 LISCNALLSCATLRSRSAMCCCVCFCLVNSSD 689
L CN +L CAT S S+ C+C C S +
Sbjct: 116 LTLCNIVLDCATCGSCSSEDSCLCCCCCGSGE 147
>AL035588-15|CAB54148.1| 246|Homo sapiens MyoD family inhibitor
protein.
Length = 246
Score = 30.3 bits (65), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 594 LISCNALLSCATLRSRSAMCCCVCFCLVNSSD 689
L CN +L CAT S S+ C+C C S +
Sbjct: 177 LTLCNIVLDCATCGSCSSEDSCLCCCCCGSGE 208
>AL035588-14|CAO72132.1| 213|Homo sapiens MyoD family inhibitor
protein.
Length = 213
Score = 30.3 bits (65), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 594 LISCNALLSCATLRSRSAMCCCVCFCLVNSSD 689
L CN +L CAT S S+ C+C C S +
Sbjct: 177 LTLCNIVLDCATCGSCSSEDSCLCCCCCGSGE 208
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,246,406
Number of Sequences: 237096
Number of extensions: 1979546
Number of successful extensions: 12299
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12256
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -