Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a04
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83114-9|CAB05553.2|  941|Caenorhabditis elegans Hypothetical pr...    31   0.98 
Z83114-8|CAJ76944.1|  875|Caenorhabditis elegans Hypothetical pr...    31   0.98 
AL021483-8|CAI79173.1|  941|Caenorhabditis elegans Hypothetical ...    31   0.98 
Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U88309-6|AAB42332.1|  389|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AC024804-5|AAF60747.2|  143|Caenorhabditis elegans Hypothetical ...    28   9.1  
AC006661-9|AAF39885.1|  337|Caenorhabditis elegans Hypothetical ...    28   9.1  

>Z83114-9|CAB05553.2|  941|Caenorhabditis elegans Hypothetical
           protein K09B11.9a protein.
          Length = 941

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = -3

Query: 742 KMKLNKEEAFQMKINTLESELLTKQKHTQQHIADLDR--KVAQERRALQ 602
           +++L + EAF+ +   L S+L+  Q+ TQQ  A+ +R  + AQ+ +A Q
Sbjct: 759 RVRLEESEAFKTQNEVLNSQLVESQRLTQQWYAEAERYKQWAQQWQAYQ 807


>Z83114-8|CAJ76944.1|  875|Caenorhabditis elegans Hypothetical
           protein K09B11.9b protein.
          Length = 875

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = -3

Query: 742 KMKLNKEEAFQMKINTLESELLTKQKHTQQHIADLDR--KVAQERRALQ 602
           +++L + EAF+ +   L S+L+  Q+ TQQ  A+ +R  + AQ+ +A Q
Sbjct: 693 RVRLEESEAFKTQNEVLNSQLVESQRLTQQWYAEAERYKQWAQQWQAYQ 741


>AL021483-8|CAI79173.1|  941|Caenorhabditis elegans Hypothetical
           protein K09B11.9a protein.
          Length = 941

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = -3

Query: 742 KMKLNKEEAFQMKINTLESELLTKQKHTQQHIADLDR--KVAQERRALQ 602
           +++L + EAF+ +   L S+L+  Q+ TQQ  A+ +R  + AQ+ +A Q
Sbjct: 759 RVRLEESEAFKTQNEVLNSQLVESQRLTQQWYAEAERYKQWAQQWQAYQ 807


>Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical
           protein Y49E10.17 protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +2

Query: 374 SPGSTRSRLNAQQCSGNVSGRSSLAFSDNSASNLTSA 484
           S GS+    ++ + S N S  SS + SDNS+SN++S+
Sbjct: 111 SSGSSNGSSSSSRRSSNGSSSSSGSTSDNSSSNISSS 147


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = -3

Query: 808 DSVKSLDAQELSFLHLKICRTWKMKLNKEEAFQMKINTLESELLTKQKHTQQHIADLDRK 629
           +SV+S    E S +   +     ++ N E    +K   L+ ELL  +KH Q  +   + +
Sbjct: 201 ESVQSTSQHEKSRIEYSLYEFEMLEKNIEHDEVVKDLQLKIELLG-EKHRQTLVEIKEAR 259

Query: 628 VAQERRALQEIREAV 584
             +E+  +Q++ EAV
Sbjct: 260 EVEEKMLMQQVEEAV 274


>U88309-6|AAB42332.1|  389|Caenorhabditis elegans Hypothetical
           protein T23B3.1 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 216 FLTVCLCVISRVKLESRCMKISQCNIYNVI 127
           F   C+  ++R K+E R M+I+ C++  V+
Sbjct: 242 FFFFCIFYVNRTKIEKRGMRIANCSVQCVL 271


>AC024804-5|AAF60747.2|  143|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.4 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 399 LTLNNVAAMSPAARLSRFLTIPHPILQV 482
           + +N VAAM   A  +RFL IPH  L +
Sbjct: 60  MIINTVAAMYALAEHNRFLLIPHIFLLI 87


>AC006661-9|AAF39885.1|  337|Caenorhabditis elegans Hypothetical
           protein H20J04.7 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -1

Query: 177 LESRCMKISQCNIYNVILKIRLMFRSFFLLFYLLMFKV 64
           L+  C+K++    + V+    ++FR  FL+F ++M ++
Sbjct: 63  LKKNCLKLTPFFAFTVVRSSMIIFRVSFLIFAIIMLEM 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,648,451
Number of Sequences: 27780
Number of extensions: 328154
Number of successful extensions: 1089
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)