Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a04
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   5.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +3

Query: 342 FRFGITALLLSALDRRGRDLTLNNVAAMSPAARLSRFLTIPHPILQVQSKLLFVMDSAGA 521
           F FG   LL+S  DR  RDL     A +S   R+   L +   I  + S+ L   D    
Sbjct: 669 FGFGSAVLLIS--DRLSRDLYCGIRAGLSWLERIQIALDVLEGIRYLHSQGLVHRDVKLK 726

Query: 522 EVLM 533
            VL+
Sbjct: 727 NVLL 730


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +3

Query: 342 FRFGITALLLSALDRRGRDLTLNNVAAMSPAARLSRFLTIPHPILQVQSKLLFVMDSAGA 521
           F FG   LL+S  DR  RDL     A +S   R+   L +   I  + S+ L   D    
Sbjct: 707 FGFGSAVLLIS--DRLSRDLYCGIRAGLSWLERIQIALDVLEGIRYLHSQGLVHRDVKLK 764

Query: 522 EVLM 533
            VL+
Sbjct: 765 NVLL 768


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +1

Query: 283 GDASDVRRVRKHCFCGFPQNSGLE*PPCCSQPWIDAVAT 399
           GD SD     +    G P         CC +P++D   T
Sbjct: 149 GDLSDFITNGEWYLIGMPGKKNTITYQCCPEPYVDVTFT 187


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +1

Query: 283 GDASDVRRVRKHCFCGFPQNSGLE*PPCCSQPWIDAVAT 399
           GD SD     +    G P         CC +P++D   T
Sbjct: 149 GDLSDFITNGEWYLIGMPGKKNTITYQCCPEPYVDVTFT 187


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +1

Query: 283 GDASDVRRVRKHCFCGFPQNSGLE*PPCCSQPWIDAVAT 399
           GD SD     +    G P         CC +P++D   T
Sbjct: 149 GDLSDFITNGEWYLIGMPGKKNTITYQCCPEPYVDVTFT 187


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +1

Query: 283 GDASDVRRVRKHCFCGFPQNSGLE*PPCCSQPWIDAVAT 399
           GD SD     +    G P         CC +P++D   T
Sbjct: 149 GDLSDFITNGEWYLIGMPGKKNTITYQCCPEPYVDVTFT 187


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +1

Query: 283 GDASDVRRVRKHCFCGFPQNSGLE*PPCCSQPWIDAVAT 399
           GD SD     +    G P         CC +P++D   T
Sbjct: 149 GDLSDFITNGEWYLIGMPGKKNTITYQCCPEPYVDVTFT 187


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +1

Query: 283 GDASDVRRVRKHCFCGFPQNSGLE*PPCCSQPWIDAVAT 399
           GD SD     +    G P         CC +P++D   T
Sbjct: 149 GDLSDFITNGEWYLIGMPGKKNTITYQCCPEPYVDVTFT 187


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +1

Query: 283 GDASDVRRVRKHCFCGFPQNSGLE*PPCCSQPWIDAVAT 399
           GD SD     +    G P         CC +P++D   T
Sbjct: 217 GDLSDFITNGEWYLIGMPGKKNTITYQCCPEPYVDVTFT 255


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +1

Query: 283 GDASDVRRVRKHCFCGFPQNSGLE*PPCCSQPWIDAVAT 399
           GD SD     +    G P         CC +P++D   T
Sbjct: 217 GDLSDFITNGEWYLIGMPGKKNTITYQCCPEPYVDVTFT 255


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 675 VNSSDSNVLIFIWKASSLFNFI 740
           +N  D NVL+FI      FN +
Sbjct: 52  INMDDENVLLFIECTMKKFNVV 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,059
Number of Sequences: 438
Number of extensions: 4133
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)