Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15a03
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 42 6e-04
07_03_0971 + 23038409-23039134,23040321-23040611 38 0.013
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 34 0.12
07_03_1570 + 27797315-27797409,27797519-27797551,27798135-277981... 33 0.21
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 31 1.1
01_01_0610 + 4533141-4533310,4534889-4535075,4535232-4535323,453... 31 1.1
03_01_0393 - 3062859-3062972,3063027-3063311,3063472-3063759,306... 31 1.5
04_04_0475 + 25500470-25500609,25500697-25500794,25502806-255029... 30 2.0
03_05_0700 + 26920743-26920771,26920880-26920991,26921205-269213... 30 2.0
02_05_1214 + 34976814-34979813 30 2.0
03_03_0181 + 15162681-15162806,15164026-15164172,15164269-151643... 30 2.6
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 29 3.5
04_04_1420 + 33441260-33443704 29 4.6
03_06_0713 - 35687672-35689219 29 4.6
01_01_0646 + 4904790-4904996,4905437-4905483,4905623-4905662,490... 29 4.6
09_04_0430 + 17502387-17503505 29 6.1
07_03_1101 + 23967298-23967366,23968918-23969021,23969616-239697... 29 6.1
07_01_0601 + 4464745-4465010,4465274-4466582 29 6.1
03_03_0256 + 15898702-15900420 29 6.1
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 28 8.1
09_04_0402 - 17304828-17305622 28 8.1
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 28 8.1
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 41.9 bits (94), Expect = 6e-04
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = -1
Query: 788 FITLSIDSELRIYNVKQASPLKIISLDYH-VSCVGWLPYNPWLAVVGTEAEMRLCDVACG 612
F + S D RI+++ + PL+I++ V CV W ++A ++ +RL DV G
Sbjct: 339 FASASHDRTARIWSMDKIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTG 398
Query: 611 REVHVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDL 489
+ + + V LA++ G +A+GD +G + +WDL
Sbjct: 399 ECIRMF-IGHRSMVLSLAMSP-DGRYMASGDEDGTIMMWDL 437
>07_03_0971 + 23038409-23039134,23040321-23040611
Length = 338
Score = 37.5 bits (83), Expect = 0.013
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Frame = -1
Query: 839 HATRILAVTFHQDKPGVFITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNP--- 669
H+ + +V F +D + ++ S D +I++ S LK + +D V + ++P
Sbjct: 174 HSEPVTSVHFIRDG-SIIVSGSHDGTCKIWDAGTGSCLKTV-IDEKKPAVSFSMFSPNGK 231
Query: 668 WLAVVGTEAEMRLCDVACGREVHVDGLKGTGGVC-KLAVNQIGGCRVAAGDSEGCVKIWD 492
++ V + ++LC+ A G+ + + C + A + G + +G + CV IWD
Sbjct: 232 FILVAALDDTLKLCNFASGKFLKMYSGHVNRKYCLQSAFSVTNGKYIVSGSEDNCVYIWD 291
Query: 491 L 489
L
Sbjct: 292 L 292
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/106 (23%), Positives = 44/106 (41%)
Frame = -1
Query: 797 PGVFITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLAVVGTEAEMRLCDVA 618
PGVF T + + + D++++ V W +N + VG + L +
Sbjct: 169 PGVFTTRGTGPRKIPRSPYKVLDAPALQDDFYLNLVDWSSHN--ILAVGLGNCVYLWNAC 226
Query: 617 CGREVHVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDLPRC 480
+ + L VC + Q G +A G ++G V++WD RC
Sbjct: 227 SSKVTKLCDLGVDDNVCSVGWAQ-RGTHLAVGTNQGKVQVWDATRC 271
>07_03_1570 +
27797315-27797409,27797519-27797551,27798135-27798199,
27798406-27798493,27798579-27798651,27798975-27799081,
27799595-27799637,27799760-27799816,27799905-27799981,
27800221-27800266,27800364-27800410,27800498-27800571,
27800656-27800711,27800885-27801011,27801133-27801206
Length = 353
Score = 33.5 bits (73), Expect = 0.21
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Frame = -1
Query: 818 VTFHQDKPGVFITLSIDSELRIYN-VKQASPLKIISLDYHV-SC--VGWLPYNPWLAVVG 651
+ FH P V +L I EL ++ ++ P ++ + H SC V ++ +
Sbjct: 12 LAFHPSSPLVATSL-ITGELYLFRYAAESQPERLFAAKSHKESCRAVRFVESGNVILTGS 70
Query: 650 TEAEMRLCDVACGREVHVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWD 492
+ + DV G+ + G+ +L + VA+GD EGC+K+WD
Sbjct: 71 ADCSILASDVETGKPIARLEDAHENGINRLVC--LTETTVASGDDEGCIKVWD 121
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Frame = -1
Query: 839 HATRILAVTFHQDKPGVFITL-SIDSELRIYNVKQASPLKIISLDYHVSC--VGWLPYNP 669
H + AV F D V + S + ++++++++A ++ ++ + SC V + P+
Sbjct: 155 HTGSVEAVEF--DTAEVLVLAGSSNGSIKLWDLEEAKVVRSLT-GHRSSCTSVEFHPFGE 211
Query: 668 WLAVVGTEAEMRLCDVACGREVHVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDL 489
+ A ++ ++++ D+ +H KG G + G V G + VK+WDL
Sbjct: 212 FFASGSSDTDLKIWDIKKKGCIHT--YKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDL 269
>01_01_0610 +
4533141-4533310,4534889-4535075,4535232-4535323,
4536203-4536308,4536441-4536649,4537049-4537091,
4537413-4537645,4537762-4538233
Length = 503
Score = 31.1 bits (67), Expect = 1.1
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = -1
Query: 836 ATRILAVTFHQDKPGVFITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLAV 657
A +L+V H KP + ++ S DS++++++ A P S SCVG + A
Sbjct: 247 ALSLLSVARH--KPSLLVSCSKDSKVKLWDT-MAPPSSGSS-----SCVGSTHLSTNSAP 298
Query: 656 VGTEAEMRLCDVACGREVHVDGLK--GTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDLPR 483
+ + LC +A G EV L+ V L ++I C + SE + +WD+ +
Sbjct: 299 IAVKCHESLCYIAAGSEVTTIDLRTMKKASVLALRDHRILSCEML--PSEWAL-LWDIRK 355
Query: 482 CSHTP 468
P
Sbjct: 356 SQELP 360
>03_01_0393 -
3062859-3062972,3063027-3063311,3063472-3063759,
3063844-3064161,3064232-3064415,3064504-3064659,
3066394-3066620,3066734-3066804,3067090-3067534
Length = 695
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -1
Query: 665 LAVVGTEAEMRLCDVACGREVHVDGLKGTGGVCKLAVNQIGGCRVAA-GDSEGCVKIWDL 489
+AV GT E+ V L G G K + I G RVA GD EGCV D
Sbjct: 180 VAVKGTPREILSGISGSAAPGEVLALMGPSGSGKTTLLSILGGRVAGPGDVEGCVSYNDE 239
Query: 488 PRC 480
P C
Sbjct: 240 PYC 242
>04_04_0475 +
25500470-25500609,25500697-25500794,25502806-25502915,
25502998-25503293,25503399-25503474,25503577-25503688,
25503955-25504004,25504090-25504392,25504446-25504547,
25505463-25505635,25505745-25505917,25505997-25506106,
25506180-25506329,25506726-25506881,25507000-25507116,
25507277-25507474,25507809-25507952
Length = 835
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Frame = -1
Query: 839 HATRILAVTFHQDKPGVFITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLA 660
H + I ++ FH K + + + E+R +NV Q S ++ ++ + V + P
Sbjct: 642 HCSGITSLDFHPKKTDLLCSCDSNGEIRYWNVSQLSCMR--AMKGGTAQVRFQPNTGQFL 699
Query: 659 VVGTEAEMRLCDVACGREVHVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDLPR- 483
TE + + DV + + L+G + G + A S+ VK+W +
Sbjct: 700 AAATENVVSIFDVETNGKKYT--LQGHNSEVQSVCWDSSG-QYLASVSQDLVKVWSISSG 756
Query: 482 -CSH 474
C+H
Sbjct: 757 DCTH 760
>03_05_0700 +
26920743-26920771,26920880-26920991,26921205-26921306,
26921391-26921503,26921858-26921927,26922348-26922425,
26922500-26922616,26922738-26922832,26923080-26923159,
26923405-26923532
Length = 307
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Frame = -1
Query: 788 FITLSIDSELRIYNVKQASPLKIISLDYHVS---CVGWLPYNPWLAVVGTEAEMRLCDV- 621
F+ + + +R++++ S +IS D H S VG+ W+ + +R+ D+
Sbjct: 60 FLAAAGNPHIRLFDINSNSNHPVISYDSHTSNVMAVGFHCDGNWMYSGSEDGTVRIWDLR 119
Query: 620 --ACGREVHVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDL 489
C RE T L NQ + +GD G +++WDL
Sbjct: 120 TATCQREYESRAAVNT---VVLHPNQK---ELISGDQNGNIRVWDL 159
>02_05_1214 + 34976814-34979813
Length = 999
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 287 ELLMRVKVNSNLYRVTPAPLAANVG 361
EL +R +V S + R PAP+AAN G
Sbjct: 440 ELFVRAQVGSQMLRTRPAPVAANRG 464
>03_03_0181 +
15162681-15162806,15164026-15164172,15164269-15164355,
15165659-15165793,15165883-15165987,15166079-15166170,
15166259-15166364,15166463-15166549,15166653-15167084
Length = 438
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/104 (22%), Positives = 46/104 (44%)
Frame = -1
Query: 782 TLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLAVVGTEAEMRLCDVACGREV 603
T + D +R ++ ++ S + + + V+ P LAV+G ++ + D G+E
Sbjct: 238 TANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKLLAVLGDSSDCLIADSQSGKE- 296
Query: 602 HVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDLPRCSHT 471
+ LKG + G VA G+ + ++WD+ S +
Sbjct: 297 -MARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNMSRS 339
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 532 TLQPPI*FTASLQTPPVPLSPSTCTSLP 615
TL P + PP PLSP CT+LP
Sbjct: 433 TLTTPSPSVPNTAAPPAPLSPLICTTLP 460
>04_04_1420 + 33441260-33443704
Length = 814
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = -1
Query: 623 VACGREVHVDGLKGTGGVCKLAVNQIGGCRVA-----AGD-SEGCVKIWDLPRC 480
VA GR+ +V GL G+ G+C C V A D S+GC + D+ RC
Sbjct: 283 VAVGRQCYVHGLCGSNGICSFRPGPTCSCPVGYVPNDASDWSKGCRRSPDV-RC 335
>03_06_0713 - 35687672-35689219
Length = 515
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 569 KRRPFL*AHRRALPSRKQRHTGASL-LPCRPRPARDCT 679
+RR A RR PSR+ H+GA+L L P PA T
Sbjct: 17 RRRSTAPARRRGPPSRRHPHSGAALTLRAAPPPATQPT 54
>01_01_0646 +
4904790-4904996,4905437-4905483,4905623-4905662,
4905770-4905970,4906260-4906472,4906561-4906629,
4906711-4906840,4906934-4906974,4907063-4907287,
4907575-4907745,4908713-4908778
Length = 469
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 226 FKKKNNQPSILKSI*PVRLVRAVNESES 309
FKKK N P LK I P ++RAV + S
Sbjct: 394 FKKKRNFPITLKYIDPTYMIRAVRSNAS 421
>09_04_0430 + 17502387-17503505
Length = 372
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 508 QPSESPAATLQPPI*FTASLQTPP-VPLSPSTCTSLPQATSHRRISASVPTTAS 666
QP P PP A L TPP P + + PQ+T +R++ P TA+
Sbjct: 165 QPQPQPPPQPTPPR--AAPLPTPPRAPPQSTPPRAAPQSTPPQRVAPQPPATAA 216
>07_03_1101 +
23967298-23967366,23968918-23969021,23969616-23969716,
23969792-23969858,23969910-23970045,23970470-23970583,
23970649-23970786,23970865-23970949,23971029-23971075,
23971216-23971351,23971396-23971436
Length = 345
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 830 RILAVTFHQDKPGVFITLSIDSELRIYNVKQASPLKII-SLDYHVSCV 690
RI ++ FH +T D +R+Y+++ A LK I S Y V V
Sbjct: 26 RISSMDFHSKATNYLVTACDDESIRLYDIQNAVCLKTINSKKYGVELV 73
>07_01_0601 + 4464745-4465010,4465274-4466582
Length = 524
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 544 PI*FTASLQTPPVPLSPSTCTSLPQATSHRRISASVPTTASQGLYGSQ 687
PI TA LQ PP P + + S T + PTT+S + +Q
Sbjct: 185 PIAATAPLQPPPPPAAAAAAGSPSATTPEPGHGEATPTTSSSAQFQTQ 232
>03_03_0256 + 15898702-15900420
Length = 572
Score = 28.7 bits (61), Expect = 6.1
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 6/126 (4%)
Frame = -1
Query: 839 HATRILAVTFHQDKPGVFITLSIDSELRIYNVKQASPLKIISLDYHVSC--VGWLPYNPW 666
H + +TF D F+T S D LR++ +K IS + S + P + W
Sbjct: 411 HLGAVNTITF-VDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNSNW 469
Query: 665 LAVVGTEAEMRLCDVA----CGREVHVDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKI 498
LA + ++ + ++ G G C++ + G V +GD EG
Sbjct: 470 LAAQSLDNQILIYSTKERFQLNKKKRFAGHIVAGYACQVNFSPDGRF-VMSGDGEGSCWF 528
Query: 497 WDLPRC 480
WD C
Sbjct: 529 WDWKSC 534
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 451 MSKSSPGVCEQRGRSQIFTQPS--ESPAATLQPPI*FTASLQTPPVPLSPSTCTSLPQA 621
M + G+ +Q+ Q P +PA T+ PP + Q PP P P+ TS+ A
Sbjct: 389 MMRFFEGLMKQKITGQTIPMPPIIAAPAITVMPPPAPSQQPQPPPPPSHPTPITSVAPA 447
>09_04_0402 - 17304828-17305622
Length = 264
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 511 PSESPAATLQPPI*FTASLQTPPVPLSPSTCTSLPQATSHRRISASVPTTASQGLYGSQP 690
P P PP+ T++ +PP S + S P + RR A + T G GS
Sbjct: 18 PLFKPTTPPPPPLLSTSTSTSPPHDFSFAHYLSSPPPSVQRRGRADMSRTPPLGRVGSDL 77
Query: 691 THD 699
+H+
Sbjct: 78 SHN 80
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 28.3 bits (60), Expect = 8.1
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = -1
Query: 839 HATRILAVTFHQDKPGVFITLSIDSELRIYNVKQAS 732
H+T ++++ FH +K + + D E+R +++ S
Sbjct: 655 HSTSVVSLDFHPNKEDIICSCDSDGEVRCWSIDNGS 690
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,972,110
Number of Sequences: 37544
Number of extensions: 444336
Number of successful extensions: 1519
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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