Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15a03
(839 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 34 0.11
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 34 0.11
AC006611-4|AAK85456.2| 328|Caenorhabditis elegans Hypothetical ... 33 0.33
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 31 1.0
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 31 1.3
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 30 1.8
Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical pr... 30 2.4
U61949-2|AAB03152.1| 884|Caenorhabditis elegans Puromycin-sensi... 29 4.1
U61949-1|AAY44009.1| 948|Caenorhabditis elegans Puromycin-sensi... 29 4.1
Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical pr... 29 5.4
AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical ... 28 7.2
AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein. 28 7.2
DQ904352-1|ABI78934.1| 564|Caenorhabditis elegans malignant bra... 28 9.5
AC024792-4|AAF60679.2| 544|Caenorhabditis elegans Hypothetical ... 28 9.5
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +1
Query: 451 MSKSSPGVCEQRGRSQIFTQPSESPAATLQPPI*FTASLQTPPVPLSPSTCTSLPQATSH 630
++ P E+ ++ T +E PA T PP + P + ST T+LP T+
Sbjct: 539 ITTEEPTTTEESSTTEEVTT-TEEPANTGNPPTTENPTTTEQPTSTAESTTTALP-FTTE 596
Query: 631 RRISASVPTTASQGLYGSQPT 693
+ ++ PTTA + +PT
Sbjct: 597 QTVTTEEPTTAEKSTATQKPT 617
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 34.3 bits (75), Expect = 0.11
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Frame = -1
Query: 836 ATRILAVTFHQD-KPGVFITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLA 660
A+++L V + P +F + D +LR Y+ + P++ + + ++ + L
Sbjct: 418 ASKVLDVATNMGASPSLFASGHFDKKLRFYDGRSTDPVRTVDMGGRITSLDVTMSGCELL 477
Query: 659 VVGTEAEMRLCDVACGREVHVDGLKG--TGGVCKLAVNQIGGCRVAAGDSEGCVKIWD 492
V + + L D+ + VH + T V G VAAG S G + +W+
Sbjct: 478 VSTRDDTISLIDLRTFQTVHCYSAENYRTSSDLSRVVLSSGNEYVAAGSSNGSIFVWN 535
>AC006611-4|AAK85456.2| 328|Caenorhabditis elegans Hypothetical
protein C30F8.3 protein.
Length = 328
Score = 32.7 bits (71), Expect = 0.33
Identities = 25/77 (32%), Positives = 34/77 (44%)
Frame = +1
Query: 460 SSPGVCEQRGRSQIFTQPSESPAATLQPPI*FTASLQTPPVPLSPSTCTSLPQATSHRRI 639
S PG C + +++ P P A P FT PP P+ PS S Q S I
Sbjct: 39 SRPGGCVAAAPAALYSAPVPPPPAYPFAPQVFTQPPPPPPPPVLPS-AASARQLPSAVVI 97
Query: 640 SASVPTTASQGLYGSQP 690
SV ++ QG+Y +P
Sbjct: 98 PVSV-DSSYQGVYQDRP 113
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = -1
Query: 701 VSCVGWLPYNPWLAVVGTEAEMRLCDVACGREVHVDGLKGTGGVCKLAVNQIGGCRVAAG 522
V+ + W+ + P+L VG + +R+ DV C + + + GGV K A+ +A
Sbjct: 167 VNTIDWIWHGPFLLAVGDDESLRVMDVRCPKA--FNAVFFDGGVQKTALCSTRPLEIACW 224
Query: 521 DSEGCVKIWDLPR 483
+ V ++D+ R
Sbjct: 225 NGSN-VLLYDVRR 236
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 511 PSESPAATLQPPI*FTASLQTPPVPLS-PSTCTSLPQATSHRRISASVPTTASQGLYGSQ 687
P +P T P T S +PP ++ P+T T +P T+ + + T + G G+
Sbjct: 461 PPTTPGPTFYPVT--TVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTIGTS 518
Query: 688 PT 693
PT
Sbjct: 519 PT 520
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 30.3 bits (65), Expect = 1.8
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Frame = -1
Query: 839 HATRILAVTFHQDKPGVFITLSIDSELRIYNVKQASPLKIISLDYHVSCVGWLPYNP--- 669
H +I AV H D I+ S DS +R+++ +S II D H + V + N
Sbjct: 250 HNKKINAVVLHPDNITA-ISASADSHIRVWSATDSSSKAII--DVHQAPVTDISLNASGD 306
Query: 668 WLAVVGTEAEMRLCDVACGREVHVDGLKGTGGVCKLAVN-QIGGCRVAAGDSEGCVKIWD 492
++ ++ D+ G+ + ++ + ++ G G ++ VKIWD
Sbjct: 307 YILSASDDSYWAFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWD 366
Query: 491 L 489
L
Sbjct: 367 L 367
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -1
Query: 839 HATRILAVTFHQDKPGVFITLSIDSELRIYNVKQASPLKIISL-DYHVSCVGWLPYNPWL 663
H+ R+ +V FH +KP + L ++I+N + +K + + + ++ W+
Sbjct: 106 HSDRVKSVDFHSEKPWILTALH-TGNVQIWNYDTKTLVKAMEVSEKSTRAAKFIHRKNWI 164
Query: 662 AVVGTEAEMRLCD 624
A + ++R+ D
Sbjct: 165 ATASDDQQIRIFD 177
>Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical
protein ZC302.2a protein.
Length = 501
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = -1
Query: 776 SIDSELRIYNVKQASPLKII-SLDYHVSCVGWLPYNPWLAVVGTEAEMRLCDVACGREVH 600
S D+ ++I++V + L+ + +V C + P + +A G + +R+ D G V
Sbjct: 274 SDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIASAGFDETVRVWDFKTGLCVK 333
Query: 599 VDGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWD 492
+ + ++ N G +A +GC+++WD
Sbjct: 334 CIPAH-SDPITSISYNHDGNT-MATSSYDGCIRVWD 367
>U61949-2|AAB03152.1| 884|Caenorhabditis elegans
Puromycin-sensitive aminopeptidaseprotein 1, isoform a
protein.
Length = 884
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 764 ELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLAV 657
E+R+Y V SLD V C+ W YN W +
Sbjct: 226 EMRVYTVPGKKEQGQYSLDLSVKCIDW--YNEWFDI 259
>U61949-1|AAY44009.1| 948|Caenorhabditis elegans
Puromycin-sensitive aminopeptidaseprotein 1, isoform b
protein.
Length = 948
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 764 ELRIYNVKQASPLKIISLDYHVSCVGWLPYNPWLAV 657
E+R+Y V SLD V C+ W YN W +
Sbjct: 290 EMRVYTVPGKKEQGQYSLDLSVKCIDW--YNEWFDI 323
>Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical
protein K08F9.2 protein.
Length = 600
Score = 28.7 bits (61), Expect = 5.4
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Frame = -1
Query: 821 AVTFHQDKPGVFITLSIDSELRIYNVKQASPLKII-SLDYHVSCVGWLPYN---PWLAVV 654
+V F +P I+ S D+ + I+ + P K + D+H V YN A
Sbjct: 152 SVDFKPTRPFRIISGSDDNTVAIF---EGPPFKFKHTFDHHKKFVQSTRYNNDGSLFAST 208
Query: 653 GTEAEMRLCDVACGREVHV----DGLKGTGGVCKLAVNQIGGCRVAAGDSEGCVKIWDL 489
G++ + L + G +V V G+ TG + LA + R+A ++ VKIWD+
Sbjct: 209 GSDGTVVLYNGVDGEKVGVLEDAKGVAHTGSIFALAWSP-DQSRIATASADKSVKIWDV 266
>AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical
protein Y44F5A.1 protein.
Length = 383
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = -1
Query: 755 IYNVKQASPLKIISLDYHVSCVGWLPYNPWLAVVGTEAEMRL-CDVACGREVHVDGLKGT 579
I+ + S ++ + LD H V + N L V + R+ C + C R V
Sbjct: 45 IWKFQTKSSIRGVDLDEHKKRVYAVTKNRSLCVFDIDTGKRVRCILKCHRSVPT------ 98
Query: 578 GGVCKLAVNQIGGCRVAAGDSEGCVKIWDL 489
+C L + ++A D G VK W+L
Sbjct: 99 -AICTLPPTALKSQQLATADESGEVKTWNL 127
>AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein.
Length = 383
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = -1
Query: 755 IYNVKQASPLKIISLDYHVSCVGWLPYNPWLAVVGTEAEMRL-CDVACGREVHVDGLKGT 579
I+ + S ++ + LD H V + N L V + R+ C + C R V
Sbjct: 45 IWKFQTKSSIRGVDLDEHKKRVYAVTKNRSLCVFDIDTGKRVRCILKCHRSVPT------ 98
Query: 578 GGVCKLAVNQIGGCRVAAGDSEGCVKIWDL 489
+C L + ++A D G VK W+L
Sbjct: 99 -AICTLPPTALKSQQLATADESGEVKTWNL 127
>DQ904352-1|ABI78934.1| 564|Caenorhabditis elegans malignant brain
tumor repeat protein1 protein.
Length = 564
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 107 YPIRIKNSLKTPISYTDYLCPSIDRRLLGKTNRKSKLGTYLKKK 238
+PI I N P+ Y + +D RL G K K YLK+K
Sbjct: 417 FPIHIDNHFMHPVGYAEKFGIKLD-RLAGTEPGKFKWEGYLKEK 459
>AC024792-4|AAF60679.2| 544|Caenorhabditis elegans Hypothetical
protein Y48G1A.6 protein.
Length = 544
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 107 YPIRIKNSLKTPISYTDYLCPSIDRRLLGKTNRKSKLGTYLKKK 238
+PI I N P+ Y + +D RL G K K YLK+K
Sbjct: 397 FPIHIDNHFMHPVGYAEKFGIKLD-RLAGTEPGKFKWEGYLKEK 439
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,163,778
Number of Sequences: 27780
Number of extensions: 384060
Number of successful extensions: 1204
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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