Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15a03
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   8.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   8.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   8.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   8.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 513 FRVTRRHPATPDLIHGQLTNAARSFEPIDVHFPPASNV 626
           +RVT +   TPD +  QL  ++        +F  ASN+
Sbjct: 855 YRVTVKREVTPDGVIAQLQISSAEASDSGAYFCQASNL 892


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 513 FRVTRRHPATPDLIHGQLTNAARSFEPIDVHFPPASNV 626
           +RVT +   TPD +  QL  ++        +F  ASN+
Sbjct: 851 YRVTVKREVTPDGVIAQLQISSAEASDSGAYFCQASNL 888


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 689 GWLPYNPWLAVVGTEAEMRLCDVACGREVHVDGLKG 582
           G L Y P  +      E+R  DV  G + HV G+KG
Sbjct: 513 GILVYEP--SACRPRHEIRSTDVIPGTQEHVCGVKG 546


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 155 DYLCPSIDRRLLGKTNRKSK 214
           DY  P + RRL+ +  R SK
Sbjct: 781 DYRIPEVMRRLMSEDKRLSK 800


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 112 YSNKKLLKNSYFLHRLSMSIHR*AFIRKNKP 204
           Y   K L   YFL R+S  + + A    NKP
Sbjct: 262 YFLHKQLMTRYFLERMSNDLGKTAEFDWNKP 292


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 112 YSNKKLLKNSYFLHRLS 162
           YS+K LL N Y+L RLS
Sbjct: 261 YSHKLLL-NRYYLERLS 276


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 112 YSNKKLLKNSYFLHRLS 162
           YS+K LL N Y+L RLS
Sbjct: 261 YSHKLLL-NRYYLERLS 276


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 112 YSNKKLLKNSYFLHRLSMSIHR*AFIRKNKP 204
           Y   K L   YFL R+S  + + A    NKP
Sbjct: 262 YFLHKQLMTRYFLERMSNDLGKTAEFDWNKP 292


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -1

Query: 671 PWLAVVGTEAEMRLCDVACGREVHVDGLKGTGGVCKLAVNQI 546
           P L V   +    L  +    ++ V+   G GG+  LAV  I
Sbjct: 153 PKLHVFDLKTSNHLKQIEIPHDIAVNATTGKGGLVSLAVQAI 194


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -1

Query: 725 KIISLDYHVSCVGWLPYNPWLAVVGTEAEMRLCDVA 618
           K I    + +CV WL + P     G    +R+  ++
Sbjct: 848 KHIGFTMYTTCVIWLAFVPLYFGTGNNVALRITSMS 883


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,934
Number of Sequences: 438
Number of extensions: 4428
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)