Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15a01
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 32 0.11
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 31 0.26
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 30 0.34
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.34
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 30 0.45
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 30 0.45
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 29 0.78
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 29 0.78
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 1.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 1.0
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.4
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 28 1.8
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 28 1.8
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 2.4
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 27 3.2
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.2
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 4.2
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 4.2
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 26 5.5
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 7.3
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 7.3
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 7.3
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 26 7.3
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 7.3
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 9.6
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 9.6
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 9.6
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.9 bits (69), Expect = 0.11
Identities = 29/120 (24%), Positives = 53/120 (44%)
Frame = -2
Query: 375 EVLKNAIEKRKKSLMKDASMNTNTDHDIAAELTKHVGTLRKISLIAEEFNKKTAKNLKEI 196
E+ + K+++ L K D +L K R+ AE ++ A+ K +
Sbjct: 575 EIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRRE---AERLAEQAAQ--KAL 629
Query: 195 VDSVQEELIQKLEEIKAKQKPGAVHIETVRE*KEKYQLQERKIKKLNLTNSNSDRRALSK 16
QEE +K EE + K++ E R+ +E+ Q Q+ + KKL +DR +++
Sbjct: 630 EAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAR 689
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 30.7 bits (66), Expect = 0.26
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = -2
Query: 375 EVLKNAIEKRKKSLMKDASMNTNTDH-DIAAELTKHVGTLRKISLIAEEFNKKTAKNLKE 199
++ ++ E++ + +DA +NT +H DI L K T+ K+ K+ +NL++
Sbjct: 101 QIQRDEAEQKAEIYNRDA-LNTKQEHLDIKKRLEKSDETVCKL--------KEENENLQD 151
Query: 198 IVDSVQEELIQKLEEIKAKQKPGAVHIETVR 106
++ +V EL++ +EIK + V E+V+
Sbjct: 152 MLRNVGNELVESRDEIKELIEKQKVQKESVK 182
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 30.3 bits (65), Expect = 0.34
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = -2
Query: 327 DASMNTNTDHDIAAELTKHVGTLRKISLIAEE-FNKKTAKNLKEIVDSVQEELIQKLEEI 151
D N N D + EL + SL E N +N +E+ DS+ ++L +
Sbjct: 555 DLPTNFNMDPKVYEELILQLDKALDFSLTVENNVNVDEIENYEEVRDSILKKLSDLRDRP 614
Query: 150 KAKQKPGAVHIE 115
K +KP H++
Sbjct: 615 KRSEKPRIYHLD 626
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.3 bits (65), Expect = 0.34
Identities = 25/120 (20%), Positives = 54/120 (45%)
Frame = -2
Query: 375 EVLKNAIEKRKKSLMKDASMNTNTDHDIAAELTKHVGTLRKISLIAEEFNKKTAKNLKEI 196
E K +++K+KKS K+ S + + ++E S +E + +++ + E
Sbjct: 65 EPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSESE- 123
Query: 195 VDSVQEELIQKLEEIKAKQKPGAVHIETVRE*KEKYQLQERKIKKLNLTNSNSDRRALSK 16
EE+I K EE K + E+ E + +++E+K + ++ +S + S+
Sbjct: 124 -----EEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESE 178
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 29.9 bits (64), Expect = 0.45
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 218 VFLLNSSAIRDIFRRVPTCLVNSAAIS*SVFVFIDAS 328
+ LL + I +F VPTC++ S +S V +F DA+
Sbjct: 413 LILLATFFIMPVFSTVPTCMLASMVVSLGVSLFADAA 449
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 29.9 bits (64), Expect = 0.45
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -2
Query: 672 NIIQTIIESITNALPIKLSRRTTPPK-KESPMKIETLQKFAPELVPKNTVE 523
+ +Q I+E + +A PIK R+T P+ + + + E + + V KNTV+
Sbjct: 93 DFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVKKNTVK 143
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 29.1 bits (62), Expect = 0.78
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Frame = -2
Query: 465 NVISMTEVSVTETIAKNSSFKIP----KMPLVNSEVLKNAIEK-RKKSLMKDASMNTNTD 301
N+ + + + T+ A++S +P K L N+ +K R+ ++ AS+++N
Sbjct: 22 NLDELEQQAQTQVQAQSSQVVVPSEKQKQNLNLPNSYTNSSQKVRESTVNSQASLSSN-- 79
Query: 300 HDIAAELTKHVGT---LRKISLIAEEFNKKTAKNLKEIVDSVQEELIQKLEEIK 148
D+ EL G LR L E N ++L + Q+E +KLEE+K
Sbjct: 80 -DLRTELLIKSGENAILRANLLKQSEANNAALESLNNSIKQKQDEYQRKLEELK 132
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 29.1 bits (62), Expect = 0.78
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = -2
Query: 600 PKKESPMK---IETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEVSVTE 430
PKKE+ + + LQ+ + + K EI+ I LE+V+ + ++ N+I+ T+V VT
Sbjct: 283 PKKENIIPKYYLRYLQRLSRTEINK---EIIEIEKLELEVVQFQMSIANLIN-TQVEVTN 338
Query: 429 TI 424
TI
Sbjct: 339 TI 340
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = -2
Query: 426 IAKNSSFKIPKMPLVNSEVLKNAIEKRKKSL--MKDASMNTNTDHDIAAE-LTKHVGTLR 256
+ K +SF+ P + + + VL+ ++EKRK ++ +KD M N I E + H T+
Sbjct: 21 LMKRNSFRRPLLNMRCNSVLQYSLEKRKLTVQDLKDTRMELNNMIRILTEAMAAHEWTVD 80
Query: 255 KISL 244
+++
Sbjct: 81 NVNI 84
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 1.0
Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Frame = -2
Query: 573 ETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEVSVTETIAKNSSFKIPK 394
E L K +L +N S+ ++ E+ + ++N + +T +K ++ +
Sbjct: 588 EKLAKSVMQL-KENEQNFSSLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQQLQLER 646
Query: 393 MPLVNSE-VLKNAIEKRKKSLMKDASMNTNT--DHDIAAELTKHVGTLRKISLIAEE--- 232
E L + + L+K N + + L K++ TL++ +EE
Sbjct: 647 ANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALR 706
Query: 231 FNKKTAKNLKEIVDSVQ 181
F+K AKNL+E++D+++
Sbjct: 707 FSKLEAKNLREVIDNLK 723
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 28.3 bits (60), Expect = 1.4
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Frame = -2
Query: 420 KNSSFKIPKM-PLVNSEVL---------KNAIEKRK--KSLMKDASMNTNTDHDIAAELT 277
KN + +PK PL+++E+L NA E RK +++ ++ + + +H
Sbjct: 316 KNITSLLPKQDPLISTEILVYNDLSHSLSNA-ESRKLCEAVGENVVVTSIREHSQLQTWV 374
Query: 276 KHVGTLRKISLIAEEFNKKTAKNLKEIV 193
K + LR++ ++AEE N+K + IV
Sbjct: 375 KKLPQLRQLPIVAEELNQKLQIGINSIV 402
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 176 SSWTLSTISFKFFAVFLLNSSAIRDIFRRVPTCLVN 283
+SW + S +F VF + SS + I VP+C++N
Sbjct: 309 TSWLIFQCSGEFRLVFSIESSNLLVIESHVPSCVLN 344
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/98 (22%), Positives = 46/98 (46%)
Frame = -2
Query: 411 SFKIPKMPLVNSEVLKNAIEKRKKSLMKDASMNTNTDHDIAAELTKHVGTLRKISLIAEE 232
S+ +PK+ LVN++ + + + S +K ++ D D A + G LR I ++ +
Sbjct: 1767 SYLLPKVLLVNNDKINDLFSEILMSFLK--FLDLKDDIDKAQFKLLYNGFLRIILVLLHD 1824
Query: 231 FNKKTAKNLKEIVDSVQEELIQKLEEIKAKQKPGAVHI 118
F A + +++ + E +Q L + P +H+
Sbjct: 1825 FPGFLATHCYQLIPYIPLECVQ-LRNMVLSAFPSDLHL 1861
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 27.5 bits (58), Expect = 2.4
Identities = 28/132 (21%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Frame = -2
Query: 654 IESITNALPIKLSRRTTPPKKESPMKIETL-QKFAPELVPKNTVEIVSIPNQV--LEIVE 484
+ES+ A+ + + +R + +S +++ + +LVP +P + +E +
Sbjct: 248 VESVALAVLVPILKRALAQRSQSMLRLTVIITDNLCKLVPDPAEASDFLPELIPDVERIA 307
Query: 483 AEKAVDNVISMTEVSVTETIAKNSSFKIPKMPLVNSEVLKNAIEKRKKSLMKDASMNTNT 304
A+ V ++ ++T T+ K ++ + K NSE K A++ K L + NT+
Sbjct: 308 QTAAMPEVRALASHALT-TLNKAAAAQAAKAAN-NSE--KQALDSACKELREAVLKNTSV 363
Query: 303 DHDIAAELTKHV 268
H++A + +V
Sbjct: 364 PHELANSIIDYV 375
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -2
Query: 204 KEIVDSVQEELIQKLEEIKAKQKPGAVHIETVRE*KEKYQLQERKIKK 61
+E+ V EE ++ EE+K ++ A IE V + EK + + +K+K+
Sbjct: 212 REVEKEVPEE--EETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKE 257
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 217 SFFIKLFSYQRYLSQGSNVLSQLSGNIVIRV 309
S FI LFS QR+ S S + SG+I +R+
Sbjct: 2151 SDFIPLFSMQRWNSITSMFFAHASGSIALRI 2181
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 4.2
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Frame = -2
Query: 471 VDNVISMTEVSVTETIAKNSSFKIPKMPLVNSEVL-KNAIEKRKKSLMKDASMNTNTDHD 295
V + S + V T + + S IPK + VL K +E + + +++A+ +D
Sbjct: 16 VGKLSSSSNVDPTLNLLFSQSKPIPKPVAKETTVLTKKDVEVEEANGVEEAAETIESD-- 73
Query: 294 IAAELTKHVGTLRKISLIAEEFNKKTAKNLKEIVDSVQEELIQKLEEIKAKQKPGAVHIE 115
TK V ++ S ++ KK + +I EEL+ + +E K K G ++ E
Sbjct: 74 -----TKEVQNIKPKS---KKKKKKLNDSSDDIEGKYFEELLAEEDEEKDKDSAGLINDE 125
Query: 114 TVRE*KEKYQLQER 73
+ ++ L+ER
Sbjct: 126 EDKSPAKQSVLEER 139
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.6 bits (56), Expect = 4.2
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = -2
Query: 231 FNKKTAKNLK-EIVDSVQEELIQKLEEIKAKQKPGAVHIETVRE*KEKYQLQERKIKKLN 55
++K +KN++ ++ +EE ++ LEE KAK+K A R+ + + R+ KL+
Sbjct: 94 YSKYASKNIELKLQKKEKEEELRNLEEEKAKKKKDA---NLKRKFLDTLDPKAREFLKLS 150
Query: 54 LTNSNS 37
+ SNS
Sbjct: 151 SSISNS 156
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = -2
Query: 354 EKRKKSLMKDASMNTNTDHDIAAELTKHVGTLRKISLIAEEFNKKTAKNLKEIVDSVQEE 175
+KR++SL K ++N +DI E ++ + +EF K TA + + ++ +Q
Sbjct: 38 QKREESLNKRRNLNAVLQNDIDVEEEADQSQVQMEQQMKDEFPKLTADVMSDDIE-LQLG 96
Query: 174 LIQKLEEIKAKQ 139
+ K + +K+
Sbjct: 97 AVTKFRKYLSKE 108
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 7.3
Identities = 21/101 (20%), Positives = 45/101 (44%)
Frame = -2
Query: 366 KNAIEKRKKSLMKDASMNTNTDHDIAAELTKHVGTLRKISLIAEEFNKKTAKNLKEIVDS 187
KN+ KR++ D T T ++ +++ + +I+ KN V
Sbjct: 584 KNSFPKRRRLSNSDTPSETTTPNNEQEQVSNQANKVDLNKIISAAMESVNQKN----VLK 639
Query: 186 VQEELIQKLEEIKAKQKPGAVHIETVRE*KEKYQLQERKIK 64
Q+E +++ + K ++K + E+++ +K L E+K K
Sbjct: 640 AQKEEEERIAQQKREEKRRLAYEESLKRHAKK--LHEKKTK 678
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.8 bits (54), Expect = 7.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -2
Query: 192 DSVQEELIQKLEEIKAKQKPG-AVHIETVRE*KEKYQLQERKIKKLNLTNSNSDRRALSK 16
D Q L++K EE++ K+K +H E R +KY K + + +T + + A +K
Sbjct: 458 DQSQSRLLKKYEELETKEKKALEMHYEKARA-TQKY-FAAMKARDILMTEKKTLKLAENK 515
Query: 15 *ND 7
+D
Sbjct: 516 EHD 518
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 7.3
Identities = 23/103 (22%), Positives = 47/103 (45%)
Frame = -2
Query: 492 IVEAEKAVDNVISMTEVSVTETIAKNSSFKIPKMPLVNSEVLKNAIEKRKKSLMKDASMN 313
IV+ + V + + + T A +SS++ + ++ LK ++ R + L N
Sbjct: 17 IVQLDNYVTRLSTEKSPNTEITQALSSSYEAEE----KAKQLKE-LDFRLQQLSSFCEWN 71
Query: 312 TNTDHDIAAELTKHVGTLRKISLIAEEFNKKTAKNLKEIVDSV 184
+AA + KH+GT R ++ ++ K N +I +S+
Sbjct: 72 KLAFEKLAANMDKHLGTERLVTFYEQKVCKLDFANSSKIYESM 114
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 7.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 652 RKYHKRVTHKVIKKD 608
R YHK V+HK+++ D
Sbjct: 306 RSYHKEVSHKIVRID 320
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 237 EEFNKKTAKNLKEIVDSVQEELIQKLEEIK 148
EE N + KEIV++++ L++ +EE+K
Sbjct: 1007 EERNSVVLRGDKEIVEALETRLLEIVEELK 1036
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = -2
Query: 255 KISLIAEEFN--KKTAKNLKEIVDSVQEELIQKLE 157
+++ + EEF +K AKN KE ++V+++ +QK +
Sbjct: 1037 RLAKLDEEFAAARKAAKNAKERFNAVKQKRLQKFQ 1071
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 9.6
Identities = 23/112 (20%), Positives = 46/112 (41%)
Frame = -2
Query: 489 VEAEKAVDNVISMTEVSVTETIAKNSSFKIPKMPLVNSEVLKNAIEKRKKSLMKDASMNT 310
V +E + N I + E + I K+ L + E L + E+ ++ +
Sbjct: 549 VLSEVGITNEIMLRENRFSSPKTPEGLVSISKLLLDDREHLSHD-ERSYIQQLQSQIKSQ 607
Query: 309 NTDHDIAAELTKHVGTLRKISLIAEEFNKKTAKNLKEIVDSVQEELIQKLEE 154
+ H+ AAE + + LR + +++ +K N +QE +Q E+
Sbjct: 608 SVHHENAAEEIRKMRNLRNSRINSQQVGEKVFVNPDVKTMDIQETFLQDYED 659
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 231 FNKKTAKNLKEIVDSVQEELIQKLEE 154
FNK + KNL++IV+ +E+ Q+L +
Sbjct: 697 FNKLSEKNLEDIVNVRLDEVQQRLND 722
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,296
Number of Sequences: 5004
Number of extensions: 46427
Number of successful extensions: 212
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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