Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14p21
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    27   0.12 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   3.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   3.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   3.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   4.5  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   7.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   7.8  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   7.8  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   7.8  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   7.8  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   7.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 342 SFTQVIIAPKYNSINKNDTKIKKIQI 419
           S  +VII PKY+ I K+D +I  I +
Sbjct: 235 SINKVIIHPKYDIIEKDDWQINDIAL 260


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 309 NVSLNTKKYSLSFTQVIIAPKYNSINK 389
           ++++N  K   +  ++ I PKY+S +K
Sbjct: 503 HITINADKPMKAAIRIFIGPKYDSHHK 529


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 309 NVSLNTKKYSLSFTQVIIAPKYNSINK 389
           ++++N  K   +  ++ I PKY+S +K
Sbjct: 503 HITINADKPMKAAIRIFIGPKYDSHHK 529


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 319 KLTFKRSHNGLKNKTPGVRLSNVTMPLF*SPA*EYRLSFTS 197
           K+T       LKN   G+ LS VT  L+ SP   + L + +
Sbjct: 237 KMTIDGESFTLKNGICGMALSPVTNNLYYSPLASHGLYYVN 277


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 319 KLTFKRSHNGLKNKTPGVRLSNVTMPLF*SP 227
           KLT       +KN   G+ LS VT  L+ SP
Sbjct: 242 KLTVAGESFTVKNGIYGIALSPVTNNLYYSP 272


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 186 RISAKYDSMAYVKEAF 139
           R+SAKYDS    K+ +
Sbjct: 100 RLSAKYDSTGEYKKRY 115


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 372 YNSINKNDTKIKKIQIKN 425
           YN+ N N+   KK+Q  N
Sbjct: 97  YNNNNYNNNNYKKLQYYN 114


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 372 YNSINKNDTKIKKIQIKN 425
           YN+ N N+   KK+Q  N
Sbjct: 97  YNNNNYNNNNYKKLQYYN 114


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 372 YNSINKNDTKIKKIQIKN 425
           YN+ N N+   KK+Q  N
Sbjct: 97  YNNNNYNNNNYKKLQYYN 114


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 372 YNSINKNDTKIKKIQIKN 425
           YN+ N N+   KK+Q  N
Sbjct: 97  YNNNNYNNNNYKKLQYYN 114


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 186 RISAKYDSMAYVKEAF 139
           R+SAKYDS    K+ +
Sbjct: 100 RLSAKYDSTGEYKKRY 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,328
Number of Sequences: 438
Number of extensions: 1765
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)