Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14p19
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    28   1.7  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    27   3.8  
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    26   5.0  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    25   8.8  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    25   8.8  

>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = -3

Query: 693 NLMKSAYGNEVFS-DSPDALIHYEFSFGMLKCYDNEKLIFGPKMKNTISSWDMPTRYWF- 520
           N  KS Y  +V + +S  AL+  EF      C+D       PK  + I  +D     W+ 
Sbjct: 165 NHEKSFYWLDVSAANSHSALLKMEFPRASPVCHDINSFTKSPKGLDVIIGFDTGDVLWYD 224

Query: 519 -FTNIYKRFSKSNAEVRSAS 463
                Y RF+K N ++ S+S
Sbjct: 225 PINFKYLRFNK-NGQLNSSS 243


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 525 NSALACPNY*LYFS-FSVQISTSRYRNILT 611
           N A+A PNY LYFS +++     +Y N LT
Sbjct: 691 NVAIAYPNYKLYFSIYTLGKFAKQYGNYLT 720


>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
 Frame = +2

Query: 539 MSQLLIVFFIFGPNINFSLS*HFNIPKLNS*WIKASGE-----SEKTSFPYADFI--KFK 697
           +SQ     ++  PNIN   +    IP     W++ S        + +++PYA  I  K K
Sbjct: 190 ISQGAAAIYLAEPNINMKTT---TIPA----WMERSNSFLNPTPDNSTYPYAATIIPKDK 242

Query: 698 FVEGPYPGIGLTF 736
           +V GPY  +  T+
Sbjct: 243 YVSGPYRRVAFTY 255


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 445 RPHQKGRSTPDFSIRFTESFVNIREKPIARW 537
           RPH+ G+ + D ++ F    +  +   I RW
Sbjct: 379 RPHEAGKDSYDTALLFVYYVMRTKHSDIQRW 409


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = -3

Query: 510 IYKRFSKSNAEVRSASSFLVWTIWNGPFLSQIIISTTLWVYMQLESEYSELYNTS 346
           +Y   S+   E+      ++  +W G FLS + ++    +Y  + SE+  + N S
Sbjct: 15  LYPEVSRKKEELSVNKWTILPALWVGGFLSALDMTIVASLYPVIGSEFKLMNNAS 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,648
Number of Sequences: 5004
Number of extensions: 65327
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)