Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14p18
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   7.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 130  KYTLESFLCYLRY 92
            KYTLE+ LC  RY
Sbjct: 1421 KYTLENLLCGSRY 1433


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 441 ILTLQRTVSYSEYTYKNSYLSNN 509
           I +L     YS Y   N+Y +NN
Sbjct: 315 ISSLSNNYKYSNYNNYNNYNNNN 337


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 598 HINR*HKDQSWKTNN 642
           H+ R H D  WK  N
Sbjct: 509 HLPRIHHDAEWKVGN 523


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 598 HINR*HKDQSWKTNN 642
           H+ R H D  WK  N
Sbjct: 424 HLPRIHHDAEWKVGN 438


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 598 HINR*HKDQSWKTNN 642
           H+ R H D  WK  N
Sbjct: 743 HLPRIHHDAEWKVGN 757


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,232
Number of Sequences: 438
Number of extensions: 4277
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)