Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14p17
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   0.72 
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   2.9  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    24   3.8  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    24   3.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   5.0  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    24   5.0  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    24   5.0  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    23   6.7  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    23   6.7  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    23   6.7  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    23   8.8  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    23   8.8  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 0.72
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 44   FSQNFHIFIFYEQFLDNQGHLNNLRIILLFV 136
            FSQ FH F+     L +  HL  L + LLF+
Sbjct: 1019 FSQKFHGFLILHDNLKDHIHLEELWLNLLFL 1049


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 2   YAXYRAYNGYNWNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLFVIWRQKYI 157
           Y  Y+  N   WN FS   + F+ + QF + Q  L  + +  L + W  K +
Sbjct: 62  YVGYKTKN-IGWNFFSVVTYCFVLFLQFAE-QSTL-RVPMASLLIFWLLKVV 110


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 56  FHIFIFYEQFLDNQGHLNNLRIILLF 133
           F + +FY+   DN G LNN  +  LF
Sbjct: 308 FLVDLFYQFDRDNDGALNNEELSALF 333


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 226 ISETSKLTTMCWLGWAVAMSLFSY--IFLSPNHK 131
           +S +   T  C + W    SLF+Y  I +S NH+
Sbjct: 315 VSTSDPYTLACLVSWRDNASLFNYAAIIISFNHQ 348


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -3

Query: 273  LEKIVSLTKTNEIKKKYLKH 214
            +EK++ L +T+ I+K +L+H
Sbjct: 1681 MEKLLGLVETSIIRKTFLQH 1700


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +2

Query: 14  RAYNGYNWNVFSQNFHIFIFYEQFLDNQGHLNN 112
           R+++ ++W++FS++    +F+++F D Q  L N
Sbjct: 456 RSFSRFSWDMFSESPVYQLFHKKF-DVQNVLKN 487


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 23   NGYNWNVFSQNFHIFIFYEQFLDNQGH 103
            NG+   +F+Q   +    EQFL+  GH
Sbjct: 1006 NGHRVLIFTQMTKVLDILEQFLNIHGH 1032


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 124 DNSKVIKMSLVI*KLFIKYENVKVLRE 44
           DN KVI +     +LF KY+++ +++E
Sbjct: 17  DNDKVIVVVTKNLELFKKYDDINLIKE 43


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +2

Query: 35  WNVFSQNFHIFIFYEQFLDNQ 97
           W++F  N  +  FY ++L+ +
Sbjct: 351 WSIFQANMELCYFYPRYLEKK 371


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 113 LRIILLFVIWRQKYIGEQRHC 175
           L +I+  V W +  IG  RHC
Sbjct: 2   LAVIVAIVRWERAMIGLLRHC 22


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 71  FYEQFLDNQGHLNNLRIIL 127
           ++E+ LDNQ  L +LRI L
Sbjct: 657 YHEELLDNQQKLYDLRIEL 675


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
 Frame = +2

Query: 20  YNGY-NWNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLFVIWRQKYIGEQRHCYSP 184
           Y GY N+  F    H    Y  F       N   +  L  IW   + G Q H  +P
Sbjct: 292 YIGYENFEAFLSGAHAMDEY--FCSTPLEKNIPALAALISIWYSDFFGAQTHLVAP 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,162,672
Number of Sequences: 5004
Number of extensions: 20708
Number of successful extensions: 52
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)