Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14p15
(771 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 39 4e-05
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 36 4e-04
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 36 4e-04
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 29 0.048
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 3.1
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 3.1
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 4.2
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 23 4.2
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 4.2
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 22 7.3
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 21 9.6
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 39.1 bits (87), Expect = 4e-05
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -3
Query: 634 ISVIFIGMPLVYSEICIGQYMNGNVISMWNFFPIFRIAGYVVGI-STQLMVYYRKKMIWK 458
++++ G+P+ + E+ +GQ + + ++ P+F+ GY + S + VYY + W
Sbjct: 25 LTLVLAGIPMFFMELALGQMLTVGGLGVFKIAPLFKGIGYAAAVMSCWMNVYYIVILAWA 84
Query: 457 LF 452
+F
Sbjct: 85 IF 86
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 35.9 bits (79), Expect = 4e-04
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -3
Query: 646 VLHAISVIFIGMPLVYSEICIGQYMNGNVISMWNFFPIFRIAGYVVGI-STQLMVYYRKK 470
V + I++ G+P+ E+ +GQ M + ++ PIF+ GY + S +YY
Sbjct: 59 VPYFIALALAGVPMFLMELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSCWTNIYYIII 118
Query: 469 MIWKLF 452
+ W LF
Sbjct: 119 LAWALF 124
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 35.9 bits (79), Expect = 4e-04
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -3
Query: 646 VLHAISVIFIGMPLVYSEICIGQYMNGNVISMWNFFPIFRIAGYVVGI-STQLMVYYRKK 470
V + I++ G+P+ E+ +GQ M + ++ PIF+ GY + S +YY
Sbjct: 112 VPYFIALALAGVPMFLMELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSCWTNIYYIII 171
Query: 469 MIWKLF 452
+ W LF
Sbjct: 172 LAWALF 177
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 29.1 bits (62), Expect = 0.048
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 114 LHIRSVQEEDRGQYMCQINTDPMKSQ 191
L I SV++ED+G Y C + D +Q
Sbjct: 355 LRIESVKKEDKGMYQCFVRNDQESAQ 380
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.0 bits (47), Expect = 3.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +3
Query: 114 LHIRSVQEEDRGQYMC 161
L + + EDRG Y C
Sbjct: 384 LRLNGINREDRGMYQC 399
Score = 23.0 bits (47), Expect = 3.1
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Frame = +3
Query: 63 TNNHRVAVSHN---GPTVWNLHIRSVQEEDRGQYMCQ 164
+ N+RV V + L I S + D G Y CQ
Sbjct: 852 STNYRVTVKREVTPDGVIAQLQISSAEASDSGAYFCQ 888
Score = 22.2 bits (45), Expect = 5.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +3
Query: 114 LHIRSVQEEDRGQYMCQI 167
L + ++Q +D G Y CQ+
Sbjct: 1369 LMLSNLQSQDGGDYTCQV 1386
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.0 bits (47), Expect = 3.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +3
Query: 114 LHIRSVQEEDRGQYMC 161
L + + EDRG Y C
Sbjct: 384 LRLNGINREDRGMYQC 399
Score = 23.0 bits (47), Expect = 3.1
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Frame = +3
Query: 63 TNNHRVAVSHN---GPTVWNLHIRSVQEEDRGQYMCQ 164
+ N+RV V + L I S + D G Y CQ
Sbjct: 848 STNYRVTVKREVTPDGVIAQLQISSAEASDSGAYFCQ 884
Score = 22.2 bits (45), Expect = 5.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +3
Query: 114 LHIRSVQEEDRGQYMCQI 167
L + ++Q +D G Y CQ+
Sbjct: 1365 LMLSNLQSQDGGDYTCQV 1382
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 69 NHRVAVSHNGPTVWNLH 119
N V VSH G VW H
Sbjct: 108 NTNVIVSHTGEVVWLSH 124
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.6 bits (46), Expect = 4.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 400 KMFVPEIMTREFLYRQVRLRGYYRSKKISHIKNQE 296
++FV I T + + + YY S+ +SH+ N E
Sbjct: 209 RIFVATIFTFSYCIPMILII-YYYSQIVSHVVNHE 242
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 114 LHIRSVQEEDRGQYMCQINT 173
L I++V D G YMCQ ++
Sbjct: 459 LIIKNVDYADTGAYMCQASS 478
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 21.8 bits (44), Expect = 7.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -1
Query: 153 IGLYLLLERYGCV 115
+GL+LLL+ + CV
Sbjct: 603 LGLFLLLDMFNCV 615
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 614 NAISVFRNMYWTVHE 570
N +SVF WT HE
Sbjct: 170 NWLSVFNGTGWTFHE 184
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,079
Number of Sequences: 438
Number of extensions: 5667
Number of successful extensions: 25
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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