Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14p13
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    27   1.4  
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    26   2.5  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   5.8  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   7.7  

>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 400 LYLFSVSYSFYRN*NHNNAKKVF 468
           ++L + ++ FYRN N+ NA+ +F
Sbjct: 323 MFLIARAWKFYRNRNYQNARSLF 345


>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
 Frame = +2

Query: 248 HVCFSKHYLNIVNKAPET-----GGKCYGLFAVKVKLVFYLIVSQAHIFFRCLIYVCIFL 412
           H+ F+  + +  NK          GK   L   K  + F L  + ++       Y CIF+
Sbjct: 30  HIYFNDCFYSTFNKTKTIIVVILSGKLSDLIDFKSYIEFVLKTNNSYSAILISYYRCIFI 89

Query: 413 VSLIH 427
           +SL H
Sbjct: 90  ISLFH 94


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 451 CYDFNFDKMNKRH*KDT-DIYQTSKKNMSLRNNEIEYKFYF 332
           C DF F     +  +D  D+Y T ++ MS+ +  + Y FY+
Sbjct: 68  CRDFMFFCWRFQSTEDAMDVYDTLQELMSINSINMLYAFYY 108


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 73  NCNRRL*SNFICFFLWQF*QRNFSRYLISCIHPPRYMLITHTLNLF 210
           N  R + +N+     W+   R+F+R+LI  I+ P        LNLF
Sbjct: 413 NIVRCMCNNYSAVGFWRAWHRSFNRWLIRYIYVPLGGSNHSILNLF 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,192
Number of Sequences: 5004
Number of extensions: 35558
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)