Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14p08
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39997-7|AAA81099.2|  147|Caenorhabditis elegans Hypothetical pr...   119   1e-27
AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical ...    29   2.4  
U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical pr...    28   3.2  
U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory ...    27   5.6  
L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degeneri...    27   5.6  
AC024765-5|AAF60527.3|  975|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z36719-5|CAA85313.2|  351|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U39997-7|AAA81099.2|  147|Caenorhabditis elegans Hypothetical
           protein F56D1.3 protein.
          Length = 147

 Score =  119 bits (287), Expect = 1e-27
 Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
 Frame = -3

Query: 366 SIRLIRQGCTNRPFFHISVTHRRRLNSQ---PVIEQLGSYDPMPNINNEKLVALNLERLK 196
           SI L   GCTNRPF+H+ V   R L  +    ++EQ+G++DP+PN  NEKLVALN  RLK
Sbjct: 14  SIGLALFGCTNRPFYHVCVFPDRALGRRYEGNILEQVGTFDPLPNQKNEKLVALNFGRLK 73

Query: 195 YWLG-KGAHVSTPVSELLGLSGFFPIHPRTYMTAWRNRQQERENLAKQEAENAKEQTAA 22
           YW+G + AH+S PV ELLGLSG FPIHP++++ A  NR    +   K  AE A+ +  A
Sbjct: 74  YWIGERNAHISVPVLELLGLSGLFPIHPKSFIRAKDNRALIADQQLKVAAEAAEAEKVA 132


>AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical
           protein Y5F2A.4 protein.
          Length = 454

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 187 WEGCSRIDPSFRTSWTLRIFPHTSSNLHDC 98
           W  C +    F+T++ +RI   T   LH C
Sbjct: 104 WTACDKCGQLFKTTYEMRIHRQTYHELHKC 133


>U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical
           protein F38B6.6 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 190 AWEGCSRIDPSFRTSWT 140
           AW+  +RIDPS   SWT
Sbjct: 556 AWKNATRIDPSHSQSWT 572


>U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory
           abnormality protein10 protein.
          Length = 724

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 181 GCSRIDPSFRTSWTLRIFPHTSSNLHDCLEK*TTRKGEPSQTRSRKCQRTNCCNINLY 8
           GCS  DP F +   ++     + N  +CLEK T + GE   +   +CQ+   CN  +Y
Sbjct: 556 GCS--DPRFPSIGGVQPCQVFNKNHRECLEKHTHQIGEIHGSFKCRCQQP--CNQTIY 609


>L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degenerin
           protein.
          Length = 724

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 181 GCSRIDPSFRTSWTLRIFPHTSSNLHDCLEK*TTRKGEPSQTRSRKCQRTNCCNINLY 8
           GCS  DP F +   ++     + N  +CLEK T + GE   +   +CQ+   CN  +Y
Sbjct: 556 GCS--DPRFPSIGGVQPCQVFNKNHRECLEKHTHQIGEIHGSFKCRCQQP--CNQTIY 609


>AC024765-5|AAF60527.3|  975|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.3 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 339 TNRPFFHISVTHRRRLNSQPVIEQLGSYDP 250
           TN P   +SV     + SQ +IE+ G+Y+P
Sbjct: 487 TNNPSCALSVISEYMMISQVLIERFGNYEP 516


>Z36719-5|CAA85313.2|  351|Caenorhabditis elegans Hypothetical
           protein C06C3.6 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 288 CLNVSYGLQKCE--RMVDLCN--LGVLGE*TSLL*QNICRFH*PEVGTYFKFCI 437
           C  +SY     E    + LC   +G+LG  T+     I  FH P+  T+ K C+
Sbjct: 19  CQKLSYERSYIETPEFLSLCAKIIGILGVPTNFFASYIITFHTPKSMTHLKLCL 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,951,672
Number of Sequences: 27780
Number of extensions: 223346
Number of successful extensions: 577
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)