Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14p08
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = -3

Query: 267 LGSYDPMPNINNEKLVALNLERLK---YWLGK--GAHVSTPVSELLGLSGFFPIHPRTYM 103
           +G    +P +N+ K   +N+ER+K     L K  G  VS    E +GL    P  P +  
Sbjct: 479 IGKDYSLPMVNHSKSSRINIERMKQVYQQLNKYRGNGVSLK-GETVGLLNALP--PSSMK 535

Query: 102 TAWRNRQQERENLAKQEAENAKE 34
                +++ +++L+  E ++  E
Sbjct: 536 ETEEEKKKTKQSLSPSENQSKME 558


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 196 VLAWEGCSRIDPSFRTSW 143
           +  W G + ++PS +T W
Sbjct: 193 ISGWHGDNMLEPSPKTPW 210


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 334 STILSHFCNP*ETFKQSASNRAARFIRSNA 245
           S I+SH  N  +  ++ A       +RSNA
Sbjct: 232 SQIVSHVVNHEKALREQAKKMNVDSLRSNA 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,013
Number of Sequences: 438
Number of extensions: 3095
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)