Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14p05
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    28   1.8  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    27   3.2  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    27   4.3  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    27   4.3  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   5.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   7.5  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.9  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   9.9  

>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 476 WKRDFKTSKDKKVQQILD 423
           WKR+F++++DK ++ ILD
Sbjct: 814 WKREFQSNRDKALKAILD 831


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 652 AVPSRHFLLGLAKSARALLSNSTYCWRFSIQSTLRRD--FSNSTLYAFIGNLVIPKWN 819
           A   +HF+LG  KSARA    + Y W F+  S++  D       L   +   +I  WN
Sbjct: 136 ASAEKHFVLGNEKSARA-YGETMYYW-FTSDSSISPDTFAGRPVLNYLLAENLISAWN 191


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 713 LESKARADFANPNKKWREGTAKTSFTYLLLDPRLTHNLPERASKQNQ 573
           LE+  + D      +WRE      + Y+L++ RL      R SK  +
Sbjct: 20  LEAAEKLDVIEGKYQWREQKESDEYDYVLVESRLHELRRHRLSKNTR 66


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 629 LLDPRLTHNLPERASKQNQHVSWVTFVNS 543
           LLD     N+P+  SK+N H+S +  V+S
Sbjct: 292 LLDQYSISNIPKDESKRNSHLSILAIVDS 320


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 764  KSLRNVDWMLNLQQYVELESKARAD 690
            KSL  + ++LNL +Y++ ES A  D
Sbjct: 1161 KSLSYIGFVLNLHKYIQHESAAMCD 1185


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 163  SISSGLNCLSPSLRKISMALYNKYKPSSLLS 255
            S   G+ CL+ +L K   AL N Y+ S ++S
Sbjct: 1804 SFYMGIMCLTTALCKYHSALLNDYRKSVIMS 1834


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = -1

Query: 408 GGRSLSSHISERHTGGSVHVRSGHDRCARNK*Y*EFEGWQLLRCCRLLAVEREKAARFVL 229
           G  +++ H S R  GG+V  R+G  +C        +  +    CC      R  AA    
Sbjct: 425 GNNAVNHHHSSRSFGGNVPFRAGDWKCGSEG--CGYHNFAKNVCCLRCGASRATAA---- 478

Query: 228 IVQGHADLP*RG 193
           +V  HA  P  G
Sbjct: 479 VVADHASGPVNG 490


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 655 VPSRHFLLGLAKSARALLSNS 717
           +PS  FL+ + KS  ALL+NS
Sbjct: 480 LPSTEFLVAINKSQEALLNNS 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,056
Number of Sequences: 5004
Number of extensions: 71433
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)