Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14p05
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    26   0.49 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   1.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.5  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 748 TLRRDFSNSTLYAFIGNLVIPKWNI 822
           TLR+++ N  LY    NL I  +NI
Sbjct: 85  TLRQEYKNIKLYGLTKNLEIKNYNI 109


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +1

Query: 649 FAVPSRHFLLGLA-----KSARALLSNSTYCWRFSIQSTLR 756
           F  P +HF +GLA         +L+ N    W FS   +LR
Sbjct: 49  FPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLR 89


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +1

Query: 649 FAVPSRHFLLGLA-----KSARALLSNSTYCWRFSIQSTLR 756
           F  P +HF +GLA         +L+ N    W FS   +LR
Sbjct: 49  FPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLR 89


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 655 RRRLPSRIFSWIRDSRTISRREPANKTNM 569
           R  LP  I SW++D R +   E  + TNM
Sbjct: 636 RGDLPLSI-SWLKDGRAMGPSERVHVTNM 663


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 178 LNCLSPSLRKISMALYNKYKPSSLLSFN 261
           +NCL P+L K+++      K +  ++F+
Sbjct: 593 INCLDPNLPKLALFATKDIKQNEEITFD 620


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,444
Number of Sequences: 438
Number of extensions: 4576
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)