Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14p04
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0646 + 10141967-10142476,10143721-10144254 37 0.017
01_07_0386 + 43218686-43218745,43218972-43219190,43219307-432193... 36 0.038
08_02_1279 - 25841767-25842017,25842181-25842418,25842685-258430... 35 0.089
09_04_0608 + 18924648-18924899,18926341-18926435,18926903-189272... 34 0.15
05_03_0603 - 16117695-16118396,16118679-16118939,16120100-161201... 34 0.15
02_01_0763 - 5665010-5665202,5665285-5665375,5665460-5666245,566... 33 0.27
05_03_0668 + 16793061-16793181,16793289-16793384,16794406-167945... 32 0.62
11_08_0097 + 28330565-28330645,28330768-28330986,28331066-283311... 31 0.82
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 31 1.1
05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019... 31 1.1
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13... 31 1.4
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14... 31 1.4
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323... 31 1.4
03_02_0489 + 8836306-8836500,8836906-8837082,8837175-8837321,883... 31 1.4
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701... 31 1.4
01_05_0099 - 18098169-18098390,18098878-18098972,18099063-180991... 30 1.9
05_04_0196 - 18964927-18965218,18965337-18965503,18966182-189663... 30 2.5
02_01_0143 + 1030081-1030587,1032106-1032114 29 3.3
08_02_0075 - 11953723-11956203,11958213-11958512 29 4.4
10_04_0020 + 7644329-7644666,7644960-7645146,7645311-7645365,764... 29 5.8
09_04_0551 - 18488584-18490017 29 5.8
12_02_1218 - 27088206-27088214,27088577-27088643,27088755-270888... 28 7.7
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758... 28 7.7
>03_02_0646 + 10141967-10142476,10143721-10144254
Length = 347
Score = 37.1 bits (82), Expect = 0.017
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -1
Query: 641 TVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVL 474
T + PF VV R+MA + Y ++ AI +IY ++G+ GL+P+++
Sbjct: 262 TAGPICTGPFDVVKTRLMAQGRTGDIKYKGMVHAIRTIYTEEGLRALWKGLLPRLM 317
>01_07_0386 +
43218686-43218745,43218972-43219190,43219307-43219391,
43219583-43219713,43219802-43219900,43219984-43220088,
43220190-43220264,43222006-43222092,43222129-43222173
Length = 301
Score = 35.9 bits (79), Expect = 0.038
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = -1
Query: 638 VAVVIAHPFHVVSVRMMASFIGK----EEHYSSLLGAIVSIYKDDGILGFLHGLIPKV 477
+A+V+A+P +V VR+ A GK + HYS L A +I + +GI GL P +
Sbjct: 124 IAIVVANPTDLVKVRLQAD--GKATTVKRHYSGALNAYATIIRQEGIGALWTGLGPNI 179
>08_02_1279 -
25841767-25842017,25842181-25842418,25842685-25843018,
25843498-25843592,25845461-25845700
Length = 385
Score = 34.7 bits (76), Expect = 0.089
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Frame = -1
Query: 638 VAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLTC 459
V+ ++ HP V+ R+ + E Y S+ A IY+ DGI G GL P ++G L
Sbjct: 211 VSTLVCHPLEVLKDRLTVN----REAYPSIGLAFNKIYQTDGIGGLYAGLCPTLVGMLPY 266
Query: 458 LAVTGVLAYYVNKYFVKTKDLRYYTIPLLTFI-------TSTITYPMVVVSTCMAVAGSS 300
+ + + + + + P L I STI++P+ V + V +
Sbjct: 267 STCYYFMYETIKTSYCRAHKKKSLSRPELLIIGALSGLTASTISFPLEVARKRLMV--GT 324
Query: 299 LKAGNPPAM 273
L+ PP M
Sbjct: 325 LQGKCPPHM 333
>09_04_0608 +
18924648-18924899,18926341-18926435,18926903-18927236,
18927345-18927582,18927813-18928069
Length = 391
Score = 33.9 bits (74), Expect = 0.15
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Frame = -1
Query: 629 VIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDL---TC 459
++ HP V+ R+ + E Y S+ IY+ DGI G GL P ++G L TC
Sbjct: 218 LVCHPLEVIKDRLTIN----REVYPSISVTFSKIYRTDGIRGLYAGLCPTLIGMLPYSTC 273
Query: 458 -LAVTGVLAYYVNKYFVKTKDLR--YYTIPLLTFIT-STITYPMVVVSTCMAVAGSSLKA 291
+ + + KT R I L+ +T STI++P+ V + V +L+
Sbjct: 274 YYFMYDTIKTSYCRLHKKTSLTRPELLVIGALSGLTASTISFPLEVARKRLMV--GALQG 331
Query: 290 GNPPAM 273
PP M
Sbjct: 332 KCPPHM 337
>05_03_0603 - 16117695-16118396,16118679-16118939,16120100-16120144,
16120362-16120453,16120568-16120706,16121027-16121063,
16121147-16121434,16122000-16122074,16122505-16122581,
16123092-16123256,16123387-16123543,16124558-16124733,
16124828-16124940,16125398-16125428,16126487-16126605,
16126696-16126789,16127384-16127458,16127548-16127666,
16127751-16127907,16129252-16129398
Length = 1022
Score = 33.9 bits (74), Expect = 0.15
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -1
Query: 383 IPLLT-FITSTITYPMVVVSTC---MAVAGSSLKAGNPPAMPNYPSWQVCWRDL 234
IP+L IT I++ +VV+ +C MA G K G P PN P Q R +
Sbjct: 857 IPVLVQMITEPISWHLVVIQSCVRSMAPQGKKKKKGGPSERPNVPRLQAIQRSV 910
>02_01_0763 -
5665010-5665202,5665285-5665375,5665460-5666245,
5667745-5668225
Length = 516
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = -1
Query: 620 HPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLTCLAVT 447
+P V+ R+ A E Y + + +GI GF GL+P +L + ++T
Sbjct: 445 YPLQVIRTRLQAQRANSEAAYRGMSDVFWKTLQHEGISGFYKGLVPNLLKVVPAASIT 502
>05_03_0668 +
16793061-16793181,16793289-16793384,16794406-16794512,
16794726-16794774,16794858-16794967,16795329-16795423,
16795524-16795612,16795775-16795869,16795976-16796053,
16796425-16796481,16796776-16797027
Length = 382
Score = 31.9 bits (69), Expect = 0.62
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Frame = -1
Query: 629 VIAHPFHVVSVRMMASFIGKEE-HYSSLLGAIVSIYKDDGILGFLHGLIPKVLG----DL 465
+ +P VV R I Y L A+ I ++GI G GL+P + G +
Sbjct: 148 IATNPLWVVKTRFQTQGIRAGVIPYKGTLAALKRIAHEEGIRGLYSGLVPALAGISHVAI 207
Query: 464 TCLAVTGVLAYYVNKYFVKTKDLRYYTIPLLTFI----TSTITYPMVVVSTCMAVAGSSL 297
A + AY + + L + + + + + ST+TYP VV + + G+
Sbjct: 208 QFPAYEKIKAYLAERDNTTVEALSFGDVAVASSLAKVAASTLTYPHEVVRSRLQEQGAHS 267
Query: 296 KA 291
KA
Sbjct: 268 KA 269
>11_08_0097 +
28330565-28330645,28330768-28330986,28331066-28331144,
28331222-28331355,28331447-28331545,28331638-28331742,
28332377-28332451,28333671-28333757,28333854-28333889
Length = 304
Score = 31.5 bits (68), Expect = 0.82
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 635 AVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIP 483
AV + P VV RMM + Y+S + V K+DG L F G +P
Sbjct: 230 AVCVGSPVDVVKSRMMG-----DSAYTSTIDCFVKTLKNDGPLAFYKGFLP 275
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Frame = -1
Query: 638 VAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLTC 459
+A+ +P +V R+ Y + A+ S+Y+++G G +P V+G +
Sbjct: 159 IAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALGSVYREEGFRALYRGWLPSVIGVVPY 218
Query: 458 LAVTGVLAYYVNKYFVKT------KDLRYYTIPLL------TFITSTITYPMVVVSTCMA 315
+ + + + + ++T KD + + L I T+ YP+ V+ M
Sbjct: 219 VGLNFAVYESLKDWLLQTNPYDLGKDNELHVVTRLGCGAVAGTIGQTVAYPLDVIRRRMQ 278
Query: 314 VAG 306
+ G
Sbjct: 279 MVG 281
>05_06_0233 +
26599068-26599466,26601214-26601829,26601871-26601917,
26602101-26602268
Length = 409
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = -1
Query: 641 TVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLT 462
++A +I++P V RMM + YSS L IYK +GI F G + +
Sbjct: 262 SMAGLISYPLDTVRRRMMMQSGMDVQMYSSTLDCWRKIYKVEGIKSFYRGALSNMFRSTG 321
Query: 461 CLAVTGVLAYYVNKY 417
A+ VL V K+
Sbjct: 322 AAAIL-VLYDEVKKF 335
>12_01_0019 -
135627-135983,136564-136797,137118-137196,137268-137383,
137847-137991,138177-138594,138644-138649,139315-139945
Length = 661
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -1
Query: 638 VAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPK 480
+A V+ PF V+ RMM + G S+ + SI +++G LG G IP+
Sbjct: 568 LAAVVTTPFDVMKTRMMTAPPGTP---VSMQLIVFSILRNEGPLGLFKGAIPR 617
>11_01_0021 -
143576-143932,144434-144667,144988-145066,145138-145253,
145717-145861,146048-146465,147206-147869
Length = 670
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -1
Query: 638 VAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPK 480
+A V+ PF V+ RMM + G S+ + SI +++G LG G IP+
Sbjct: 577 LAAVVTTPFDVMKTRMMTAPPGTP---VSMQLIVFSILRNEGPLGLFKGAIPR 626
>09_04_0683 -
19431034-19431495,19431632-19431997,19432055-19432326,
19433621-19433686,19433924-19433978,19434509-19434577,
19435200-19435307,19435394-19435462,19435883-19436038,
19436089-19436229,19436514-19436568,19437103-19437233,
19437382-19437486
Length = 684
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = -1
Query: 689 KVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGI 510
+ E I +++++++ VA + ++ R+ K Y ++ A+ +Y++ GI
Sbjct: 148 QAEKKIMESKKELLLKDVARANSIEVSILKDRLYKLDSEKPRPYGTIQ-AVREVYRESGI 206
Query: 509 LGFLHGLIPKVL 474
GF GLIP ++
Sbjct: 207 RGFWKGLIPTLI 218
>03_02_0489 +
8836306-8836500,8836906-8837082,8837175-8837321,
8837636-8837737,8837824-8837894,8837992-8838059,
8838595-8838836
Length = 333
Score = 30.7 bits (66), Expect = 1.4
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Frame = -1
Query: 635 AVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLTCL 456
A + +P +V R+ A +Y + A+ +I +D+G+ G GL +LG +
Sbjct: 156 AASMTYPLDLVRTRLAAQT--NTAYYRGISHALYAICRDEGVKGLYKGLGATLLGVGPSI 213
Query: 455 AVTGVLAYYVNKYFVKTKDLRYYTIPLLTFI---------TSTITYPMVVVSTCMAVAGS 303
A++ + + ++ + R Y P+L + +STIT+P+ +V M + G+
Sbjct: 214 AISFCVYETLRSHW---QIERPYDSPVLISLACGSLSGIASSTITFPLDLVRRRMQLEGA 270
Query: 302 SLKA 291
+ +A
Sbjct: 271 AGRA 274
>02_02_0123 +
7015905-7015928,7015975-7016105,7017675-7017940,
7018239-7018327,7018716-7018811,7018874-7018969,
7019121-7019251,7020123-7020177,7020645-7020800,
7021238-7021306,7021392-7021499,7022128-7022196,
7022743-7022797,7023031-7023227
Length = 513
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = -1
Query: 689 KVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGI 510
+ E I +++++++ VA + ++ R+ K Y ++ A+ +Y++ GI
Sbjct: 300 QAEKKIMESKKELLLKDVARANSIEVSILKDRLYKLDSEKPRPYGTIQ-AVREVYRESGI 358
Query: 509 LGFLHGLIPKVL 474
GF GLIP ++
Sbjct: 359 RGFWKGLIPTLI 370
>01_05_0099 -
18098169-18098390,18098878-18098972,18099063-18099131,
18099277-18099352,18101412-18101524,18104137-18104185,
18104540-18104572,18105446-18105552,18106892-18106990,
18107122-18107203
Length = 314
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 644 QTVAVVIAHPFHVVSVRMMASFIGKEE--HYSSLLGAIVSIYKDDGILGFLHGLIPKVL 474
+ A +I +P VV ++ + HY+ ++ I +Y+ +GI GF G +L
Sbjct: 230 KVAASIITYPHEVVRSKLQEQGRARHGAVHYTGVIDCIKQVYQKEGIPGFYRGCATNLL 288
>05_04_0196 -
18964927-18965218,18965337-18965503,18966182-18966328,
18966419-18966650,18968087-18968241
Length = 330
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = -1
Query: 575 GKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLTCLAVTGVLAYYVNKY-FVKTKD 399
GK + ++LGA+ +++ +GI GF GL ++L + A+ ++ ++++ ++
Sbjct: 256 GKSKSPKTMLGALHAMWSKEGIPGFFKGLHAQILKTVLSSALLLMIKEKISRFTWISLLA 315
Query: 398 LRYY 387
LR Y
Sbjct: 316 LRRY 319
>02_01_0143 + 1030081-1030587,1032106-1032114
Length = 171
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -1
Query: 380 PLLTFITSTITYPMVVVSTCMAVAGSSLKAGNPPAMPNYPSWQVCWRDLMRNKQHKRGSS 201
PLL F+ + +++P + VA A +PP P P VC R + G S
Sbjct: 26 PLLLFLAAALSFPSSIGRIPSLVALGRRHAPSPPPPPPPPRVAVCLVGGAR-RFELTGPS 84
Query: 200 LIFRYYIAPISAFQ 159
I R+ +AP+ A Q
Sbjct: 85 -IARHVLAPLVAHQ 97
>08_02_0075 - 11953723-11956203,11958213-11958512
Length = 926
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 533 SIYKDDGILGFLHGLIPKVLGDLTCLAVTGVLAYYVNKYFVKTKD-LRYYTIPLLT 369
SI ++D L + VLG L CL + GV + FVKT + +RY + LT
Sbjct: 553 SIERNDNFEEKLDAVQDNVLGSLECLILAGVYDENYSAKFVKTLERVRYVRMLQLT 608
>10_04_0020 +
7644329-7644666,7644960-7645146,7645311-7645365,
7645390-7645438,7645984-7646200
Length = 281
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 248 CWRDLMRNKQHKRGSSLI 195
CWR +RN QH+ GS+L+
Sbjct: 222 CWRGRLRNLQHRVGSTLM 239
>09_04_0551 - 18488584-18490017
Length = 477
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 782 ASQLTSKVIVAVGID-LPEINDPPNIVTDDEPKVEDYIKLGRR 657
A ++SK V LP I DPP++ DD+ +Y L RR
Sbjct: 54 ARAVSSKSSATVSFHMLPRIPDPPSLAFDDDKFFTNYFDLVRR 96
>12_02_1218 -
27088206-27088214,27088577-27088643,27088755-27088821,
27088934-27089054,27089272-27089351,27089574-27089686,
27090305-27090420,27090507-27090575,27090684-27090758,
27090836-27090880,27091100-27091187,27091488-27091570,
27091655-27091705,27091848-27091905,27092019-27092201,
27092385-27092546,27092713-27093029
Length = 567
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 695 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIV 534
E K+E + KL D ++ + + H +H+ V M + K +S LLG ++
Sbjct: 162 EEKLEKFCKL--MDFVIDSPPPEMRHEYHLSMVDRMKDKVDKSVFWSKLLGIVM 213
>08_01_0783 +
7585326-7585477,7586420-7586589,7586687-7586801,
7586887-7587055,7587185-7587319,7587409-7587728,
7587992-7588127,7588224-7588472,7588567-7588787,
7588906-7589164,7589264-7589971,7590095-7590424
Length = 987
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 605 VSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGF 501
+S+ F+G+ E ++LG ++S KDD +L F
Sbjct: 220 LSICQCLMFLGEPETVGNILGKLLSGSKDDALLAF 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,381,043
Number of Sequences: 37544
Number of extensions: 444675
Number of successful extensions: 971
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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