Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14p03
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...   111   8e-25
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127...   106   2e-23
03_05_0106 + 20880069-20881001                                         43   3e-04
04_04_0012 + 22145111-22146388                                         42   7e-04

>02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,
            1216413-1216738,1216860-1217013,1217377-1217438,
            1218078-1218133,1219456-1221279,1221775-1222698,
            1222855-1222866
          Length = 1242

 Score =  111 bits (266), Expect = 8e-25
 Identities = 54/100 (54%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
 Frame = -1

Query: 773  IREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECA 594
            I+EE+LRTYLF+Y+  Y SLSL  L  MF+L  Q+ HS+VSKM+++EEL AS D P++C 
Sbjct: 1047 IKEEALRTYLFSYSSCYQSLSLDQLTTMFDLSEQQAHSIVSKMMMHEELHASWDQPTKCI 1106

Query: 593  ILHRSEPTRMQALALQLADKVGNLVDSNERIFE-KQGSFF 477
            I H  + TR+Q L  Q+ADK+  LV+SNER +E K G  F
Sbjct: 1107 IFHNVDQTRLQGLLFQMADKLSVLVESNERAYEAKTGGTF 1146


>07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,
            1278314-1278367
          Length = 944

 Score =  106 bits (254), Expect = 2e-23
 Identities = 49/93 (52%), Positives = 68/93 (73%)
 Frame = -1

Query: 773  IREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECA 594
            I+EE+LRTYL +Y+  Y SLSL  L  MF+L  Q+ HS+VSKM+++EEL AS D P++C 
Sbjct: 733  IKEEALRTYLLSYSSCYESLSLDQLTTMFDLSEQQAHSIVSKMMMHEELHASWDQPTKCI 792

Query: 593  ILHRSEPTRMQALALQLADKVGNLVDSNERIFE 495
            I H  + TR+Q L  Q++DK+  LV+SNER +E
Sbjct: 793  IFHNVDQTRLQGLLFQMSDKLSVLVESNERAYE 825


>03_05_0106 + 20880069-20881001
          Length = 310

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = -1

Query: 725 YASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECAILHRSEPTR-MQALAL 549
           YA + +  +A+M ELP   V   +S+MI++++   +LD  + C I+     T  +    L
Sbjct: 229 YARVEIAHIAEMIELPVDHVEKKLSQMILDKKFAGTLDQGAGCLIIFEDPKTEAIFPATL 288

Query: 548 QLADKVGNLVDS 513
           +    VG +VDS
Sbjct: 289 ETISNVGKVVDS 300


>04_04_0012 + 22145111-22146388
          Length = 425

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = -1

Query: 725 YASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECAILHRSEPTR-MQALAL 549
           Y+ + +  +A+M ELP   V   +S+MI++++   +LD  + C I+     T  +    L
Sbjct: 344 YSRVEIAHIAEMIELPVDHVEKKLSQMILDKKFAGTLDQGAGCLIIFEDPKTEAIFPATL 403

Query: 548 QLADKVGNLVDS 513
           +    VG +VDS
Sbjct: 404 ETISNVGKVVDS 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,673,615
Number of Sequences: 37544
Number of extensions: 303718
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)