Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14p02
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   4.1  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   4.1  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   4.1  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   4.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.2  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   9.5  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 141 SPPRDKRYLKSDNSYKLFR 85
           S  R+K+  K++NSY+ +R
Sbjct: 42  SREREKKSYKNENSYRKYR 60


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 141 SPPRDKRYLKSDNSYKLFR 85
           S  R+K+  K++NSY+ +R
Sbjct: 42  SREREKKSYKNENSYRKYR 60


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 141 SPPRDKRYLKSDNSYKLFR 85
           S  R+K+  K++NSY+ +R
Sbjct: 42  SREREKKSYKNENSYRKYR 60


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 141 SPPRDKRYLKSDNSYKLFR 85
           S  R+K+  K++NSY+ +R
Sbjct: 42  SREREKKSYKNENSYRKYR 60


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 165 WQLPPSRASPPRDKRYLKSDNSYKLF 88
           WQLP +  +PP    Y +   +  +F
Sbjct: 303 WQLPHNSTNPPNILLYYRDSLALSVF 328


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 141 SPPRDKRYLKSDNSYKLFR 85
           S  R+K+  K++NSY+ +R
Sbjct: 275 SREREKKSYKNENSYRKYR 293


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 512 LVYTLHCVFARYNDNTINVN 571
           L+   HCV    NDN  N N
Sbjct: 408 LIRNTHCVNNNQNDNIQNTN 427


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 211 DLPFRPILEAFLFEYLD 261
           DLP  P+ E F  +Y+D
Sbjct: 141 DLPVPPLTEVFPDKYMD 157


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 141 WRGSVVAASLDTFQ 182
           W G  + ASL TFQ
Sbjct: 115 WIGGSILASLSTFQ 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,272
Number of Sequences: 438
Number of extensions: 2967
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)