Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o22
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   2.2  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    25   3.8  

>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 221 PLVCIEEFLFNAFLNCCNERIDFCCAXRRXTRLHXIG 331
           P +  EE  FN+F N  N   D C +  +   +  +G
Sbjct: 196 PSIAEEEISFNSFSNSLNSEEDVCVSPMKPKEVSLMG 232


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 237 KNSSLTPSSTAATRELTSAALXEXI 311
           KN+SL+PSS+ A  + T  +L E I
Sbjct: 14  KNASLSPSSSPAKAQRTHLSLEEKI 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,065,409
Number of Sequences: 5004
Number of extensions: 12902
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)