Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o21
         (710 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U87964-1|AAB51273.1|  584|Homo sapiens putative G-protein protein.     31   5.4  
CR456501-1|CAG30387.1|  660|Homo sapiens GTPBP1 protein.               31   5.4  
BC014075-1|AAH14075.2|  660|Homo sapiens GTPBP1 protein protein.       31   5.4  
AL021707-5|CAI21603.2|  669|Homo sapiens GTP binding protein 1 p...    31   5.4  

>U87964-1|AAB51273.1|  584|Homo sapiens putative G-protein protein.
          Length = 584

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 292 LNPQSNYKYQHKILVIAHSNTAKGKSENLVKC 197
           LNPQ++++++ +ILV+ H  T   + + +V C
Sbjct: 399 LNPQASWEFEAEILVLHHPTTISPRYQAMVHC 430


>CR456501-1|CAG30387.1|  660|Homo sapiens GTPBP1 protein.
          Length = 660

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 292 LNPQSNYKYQHKILVIAHSNTAKGKSENLVKC 197
           LNPQ++++++ +ILV+ H  T   + + +V C
Sbjct: 475 LNPQASWEFEAEILVLHHPTTISPRYQAMVHC 506


>BC014075-1|AAH14075.2|  660|Homo sapiens GTPBP1 protein protein.
          Length = 660

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 292 LNPQSNYKYQHKILVIAHSNTAKGKSENLVKC 197
           LNPQ++++++ +ILV+ H  T   + + +V C
Sbjct: 475 LNPQASWEFEAEILVLHHPTTISPRYQAMVHC 506


>AL021707-5|CAI21603.2|  669|Homo sapiens GTP binding protein 1
           protein.
          Length = 669

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 292 LNPQSNYKYQHKILVIAHSNTAKGKSENLVKC 197
           LNPQ++++++ +ILV+ H  T   + + +V C
Sbjct: 484 LNPQASWEFEAEILVLHHPTTISPRYQAMVHC 515


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,699,403
Number of Sequences: 237096
Number of extensions: 2137255
Number of successful extensions: 7806
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7806
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)