Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o21
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.0  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   5.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   6.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   8.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.7  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 33  YMNNNINRSSRRLYIRHGI 89
           Y NNN N  +++LY ++ I
Sbjct: 333 YNNNNYNNYNKKLYYKNYI 351


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 280 SNYKYQHKILVIAHSNTAKGKSENLVKCFG 191
           +N  YQ K  ++    +AKG S+N V  FG
Sbjct: 289 NNVHYQGKENILWTQASAKGISDNGVLFFG 318


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 598 KISLRRHVR*AHSEKLRYYSYAI 530
           K SL+RHV   H+E+   Y   I
Sbjct: 18  KASLKRHVADKHAERQEEYRCVI 40


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 33  YMNNNINRSSRRLYIRHGIAIILRLYINNKNLTLRTFFPG*GTPPHRPIRNFVP--KHLT 206
           Y NNN N + ++LY  + I  I ++ +          FP     P  P++  +P  +H+ 
Sbjct: 100 YNNNNYNNNCKKLY--YNINYIEQIPVPVPVPIYCGNFPSRPMGPWVPMQEQIPRFRHIG 157

Query: 207 KFSDFP 224
             + FP
Sbjct: 158 PSTPFP 163



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 316 IMKIRNATLNPQSNYKYQH 260
           I  + N T++  +NYKY +
Sbjct: 82  ISSLSNRTIHNNNNYKYNY 100


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -2

Query: 316 IMKIRNATLNPQSNYKYQHKILVIAHSNTAKGKSENLVKCF 194
           I  + N T++  +NYKY +      ++N     + N  K +
Sbjct: 315 ISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLY 355


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 316 IMKIRNATLNPQSNYKYQH 260
           I  + N T++  +NYKY +
Sbjct: 82  ISSLSNKTIHNNNNYKYNY 100


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 316 IMKIRNATLNPQSNYKYQH 260
           I  + N T++  +NYKY +
Sbjct: 82  ISSLSNKTIHNNNNYKYNY 100


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 316 IMKIRNATLNPQSNYKYQH 260
           I  + N T++  +NYKY +
Sbjct: 82  ISSLSNKTIHNNNNYKYNY 100



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 33  YMNNNINRSSRRLY 74
           Y NNN N + ++LY
Sbjct: 100 YNNNNYNNNCKKLY 113


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 316 IMKIRNATLNPQSNYKYQH 260
           I  + N T++  +NYKY +
Sbjct: 82  ISSLSNKTIHNNNNYKYNY 100



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 33  YMNNNINRSSRRLY 74
           Y NNN N + ++LY
Sbjct: 100 YNNNNYNNNCKKLY 113


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 316 IMKIRNATLNPQSNYKYQH 260
           I  + N T++  +NYKY +
Sbjct: 82  ISSLSNKTIHNNNNYKYNY 100



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 33  YMNNNINRSSRRLY 74
           Y NNN N + ++LY
Sbjct: 100 YNNNNYNNNCKKLY 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,984
Number of Sequences: 438
Number of extensions: 5036
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)