Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o17
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    77   2e-15
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    29   0.77 
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    28   1.3  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   3.1  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   4.1  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    26   5.4  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   5.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   7.1  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    26   7.1  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   7.1  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   9.4  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   9.4  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    25   9.4  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    25   9.4  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
 Frame = -3

Query: 511 ADDQLKSFTPDINLRNFLITNLVQ--TNAGSFTWRVNIPALKDNFQNHISSFPSNLKGLQ 338
           AD  + +   DI +R+FL++NL +   N+ +F +RV I  +  + +  I  FP++L  L 
Sbjct: 152 ADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPIELISKSLKT-IEGFPASLNDLV 210

Query: 337 YCGPTLFVGGSLSDYIGKNDLPEIQEYFPLADLIFIEGAGHWVHSQKPEKFLEIVSKFL 161
           Y  PTL +    + +I  + LP  +++FP  +L+ ++  GHWVH +KP++F E +  FL
Sbjct: 211 YDSPTLVIRALKAPFIPDSALPVFKKFFPKYELVSLD-CGHWVHFEKPKEFSESIINFL 268



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 782 TYVHMAHDVMRXXXXXXXXXXXXLGHSMGGRTAMVLSL 669
           +Y  MA D  +            +GHSMG +TAMV +L
Sbjct: 69  SYSAMALDAFQFMKDHKLDKASIIGHSMGAKTAMVTAL 106


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -3

Query: 415 RVNIP---ALKDNFQNHISSFPSNLKGLQYCGPTLFVGGSLSDYIGKNDLPEIQEYFP 251
           R+NIP   A +   + +  S P +L+GLQ    TL+ G  L D    +D  E + +FP
Sbjct: 30  RLNIPLADAARVELEEYDGSDPQSLRGLQKLPRTLYFGLPLPD-SELDDTGEAKRWFP 86


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
 Frame = -3

Query: 448 LVQTNAGSFTWRVNIPALKDNFQNHISSFPSNLKGLQYCGPTLFVGGSLSDYIGKN-DLP 272
           LVQ   G+F WR ++      + +             Y G  L V G  +D + K   + 
Sbjct: 232 LVQQEDGTFVWRTDLYKTSPYWMDWFKGLSDKFLRAPY-GRMLIVAG--TDRLDKTLTIG 288

Query: 271 EIQEYFPLADLIFIEGAGHWVHSQKPEKFLEIVSKF 164
           ++Q  + L     +   GH+VH   P K   ++  F
Sbjct: 289 QMQGKYQLE---ILPETGHFVHEDVPAKISSLLLNF 321


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 391 DNFQNHISSFPSNLKGLQYCGPTL 320
           D F N  S FPS+L G+    P L
Sbjct: 200 DEFNNSSSGFPSSLNGIPIASPPL 223


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 78  FRSKGTDSIECYYYFCSLRPIFQ 146
           FRS  TD     +Y C + PIFQ
Sbjct: 262 FRSMNTDLCYAIHYACFVNPIFQ 284


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -3

Query: 592 FSMATLFDAMTAVSIRPGI-----AMSKARKLADDQLKSFTPDINLRNFLITNLVQTNA 431
           F +AT     + +S+ PGI     AM+     +DD++ +FTP   +   +  N++ T A
Sbjct: 190 FGLATREYDSSQISVTPGIIGLSVAMTITGISSDDKVVAFTPPTIVDQLVSANVIDTPA 248


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -2

Query: 191 KVLGNCLQISYGKMILKYRSKTTEVVVALNRISAL*SKDKISKMCSQELCYRGIELDN 18
           K L +  +++       Y SK  E V     I  L  KD ++   +  LC  G+E +N
Sbjct: 347 KFLSSVPELTADDTAESYLSKLRETVPYSRMIPVLAEKDHVTLNKALHLCMSGMEFEN 404


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 235  ILDLLVENILE-SRVNHFYQYNQIVNLQQTMLVHNTEGLLSLMGRMRCGFENYL 393
            +L  LV N+ E   ++   +Y  +  +   + V+  +GL +L+ ++ C FENY+
Sbjct: 2340 VLFSLVSNVPEIENLDAGSRYRAVKKILDLLKVN--QGLSNLVTKLLCSFENYV 2391


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -3

Query: 325 TLFVGGS---LSDYIGKNDLPEIQEYFPLADLIFIEGAGHWVHSQKPEKFLEIVSK 167
           T+F+ G    + D  G      ++E    A+   I  AGH  +   PE F EIV K
Sbjct: 359 TIFMYGDKDWMDDVAGLEATNRLKEMNIEAEHHIISNAGHHCYLDNPEDFNEIVLK 414


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 100 LLSATTTS-VVLDLYFNIIFP*EIWRQFPRTFLVS 201
           L S TTTS ++L L+  I+F  ++W  F   +++S
Sbjct: 180 LKSRTTTSNLLLSLFVGILFEDDLWYFFNTLYMLS 214


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/66 (22%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = -3

Query: 523 ARKLADDQLKSF-TPDINL-RNF--LITNLVQTNAGSFTWRVNIPALKDNFQNHISSFPS 356
           A    ++Q+K+    ++N+ +NF  + + L+QTN+G ++ +  + AL+  +   +  F  
Sbjct: 246 ANNSQNNQIKTLKAQNLNIHKNFQKIQSELIQTNSGLYSTKKELSALQVRYATLLRKFTD 305

Query: 355 NLKGLQ 338
             K ++
Sbjct: 306 QTKKIE 311


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 414 LQVKDPALVCTKLVIRKFLRFISGVNDLSWSSASFRALDIAIPGLI 551
           L+ K PA++   +  +K+ + +S   D SW S       +A+  LI
Sbjct: 75  LREKPPAILAEHVDEKKYQKALSYARDKSWFSTIVSTFTLAVDLLI 120


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 638 TGNQVRNLHIAVIAPWQFGLPYCAQAVIPLTTLISLAAALHHE 766
           T +++      +IAP  FG PY  QA     T I+L  A   E
Sbjct: 100 TNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDE 142


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 283 FYQYNQIVNLQQTMLVHNTEGLLS 354
           F QY +++N+   ++ HN EG L+
Sbjct: 320 FLQYVKVINVGIKVVTHNIEGFLA 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,420,088
Number of Sequences: 5004
Number of extensions: 74668
Number of successful extensions: 198
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)