Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o17
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 134 SKTTEVVVALNRISAL*SKDKISKMCSQELCYRGIELDNCF 12
           SKTT  V  + R+  L     ISK  S+E  Y+G  + +CF
Sbjct: 24  SKTT--VAPIERVKLLLQVQHISKQISEEQRYKG--MIDCF 60


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 134 SKTTEVVVALNRISAL*SKDKISKMCSQELCYRGIELDNCF 12
           SKTT  V  + R+  L     ISK  S+E  Y+G  + +CF
Sbjct: 24  SKTT--VAPIERVKLLLQVQHISKQISEEQRYKG--MIDCF 60


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 235 ILDLLVENILESRVNHFYQYNQIVNLQQTMLVHNTEGLLSLMG 363
           ILD      +ES  NH+   + +   +Q     NT GL ++ G
Sbjct: 783 ILDFHESGFMESLDNHWILRSNVQQCEQLEKAPNTLGLKNMAG 825


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 613 LVRCPPQLNWQPSQKLTHSSDSTMAVR 693
           ++R PP   W+P   L +++D    VR
Sbjct: 100 VLRLPPDKVWKPDIVLFNNADGNYEVR 126


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 511 ADDQLKSFTPDINLRNFLITNLVQTNAGSFTWRVNIPALKDN 386
           A+DQ   F   +  R FL    + +  G+F      PAL+DN
Sbjct: 473 AEDQDWGFVAMVLDRLFLWIFTIASIVGTFIILCEAPALRDN 514


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,922
Number of Sequences: 438
Number of extensions: 5115
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)