Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o16
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   4.0  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   6.9  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    26   6.9  

>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 536 KYNWFSSIDYSCSKSAKRSSKVEETSCSQM 625
           KY+W +S+D S ++S    S +  TS S+M
Sbjct: 170 KYHWETSLDESDAESISSGSLMSITSISEM 199


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 200 AERKCIFRFCSDIF--KAAPLQFY 265
           +E +C F +CS IF  +A  LQFY
Sbjct: 765 SEMECYFSYCSLIFYYQATTLQFY 788


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 760 RRCPRQ*WLYTMGKRTXRRWRQGTLRLNVLQWTVKR 653
           +R PR  W   +G+    RW  G    +   W V+R
Sbjct: 287 KRTPRALWYMMLGRINPNRWGSGEGPFDRHDWYVQR 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,429
Number of Sequences: 5004
Number of extensions: 64405
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)