Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o14
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.3  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              24   1.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   4.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.4  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   5.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.4  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = -2

Query: 301 TIRQLQEKLDCAKATYNALEAASIKITMDLNDKNQSLETDTRALEMRAALVPKRPQG 131
           T+R+LQE L         LEA   +   ++ +    L+   +   ++ A  P+R  G
Sbjct: 3   TLRELQELLRVKDEKIVELEALLCRRDAEIQELRSHLDKFLQCASLKLAFEPRRNPG 59


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +2

Query: 8   SK*KIKMKNQKENYKNY 58
           S+ +IK+ N++EN++NY
Sbjct: 52  SEARIKLINEEENFRNY 68


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 118 DFYPCPVVSWVLKQPSFPALEYQFPTIGFCR*GPS*F**MQPPRHCR 258
           +F P P+  W+  Q   P   Y  P   F R  P      +PP + R
Sbjct: 348 NFPPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNVYRFRPPLNPR 394


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +2

Query: 500 PIKLVPGTLSVIDASTEHIVCHIS-LSLKCVPRATPGYEE 616
           P ++  G   V+D  T HI C  + +  KC  R     EE
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEE 389


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +2

Query: 500 PIKLVPGTLSVIDASTEHIVCHIS-LSLKCVPRATPGYEE 616
           P ++  G   V+D  T HI C  + +  KC  R     EE
Sbjct: 61  PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEE 100


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 26/121 (21%), Positives = 42/121 (34%)
 Frame = -2

Query: 751 NXTYKTDSLKTPKRMITYEQWLQKCESTKQMALDELQDTLRLRESLFVARGRARNALQAQ 572
           N  Y  DS        T E  L  C     M ++  +  L     +F  R       + +
Sbjct: 439 NQPYTKDSYTVAGMGETIEDLLHFCRQMYAMKVNNAEYALLTAIVIFSERPNLLEGWKVE 498

Query: 571 TDVTNYMLRRRIYDTQRARNELDWQKMKMEENMEKLGTELKTMGEQFADKVNALKVAETR 392
                Y+   R Y   R R        ++   +    TEL+T+G Q ++   +LK    +
Sbjct: 499 KIQEIYLEALRAYVDNRRRPNPGTVFARLLSVL----TELRTLGNQNSEMCFSLKFKNKK 554

Query: 391 L 389
           L
Sbjct: 555 L 555


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 490 KMEENMEKLGTELKTMGE 437
           K+EE+M KL  E+K   E
Sbjct: 376 KLEESMRKLDEEMKRTDE 393


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 388 PNESQLLSKH 417
           PNESQL+ +H
Sbjct: 136 PNESQLIKRH 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,271
Number of Sequences: 438
Number of extensions: 4426
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)