Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o12
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...   122   4e-29
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    77   2e-15
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    33   0.058
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.54 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.7  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    27   2.9  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    25   8.9  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   8.9  

>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score =  122 bits (295), Expect = 4e-29
 Identities = 76/205 (37%), Positives = 103/205 (50%), Gaps = 2/205 (0%)
 Frame = -1

Query: 755 SQYXGGIEQ-EECEIPLYPGSDLPELSHIVIGLESCSHGDPDFVATCVLNXXXXXXXXXX 579
           S Y GG    ++ E P  P     E +H+VI +E     DPD  A   L           
Sbjct: 263 SHYTGGFMGIKKSEAPPVPYQQ--EFTHVVIAMEGLPVTDPDIYALACLQFLLGGGGSFS 320

Query: 578 XXXXXXXMYTRLYTNVLNRYHWMFNATAYNHAYGDTGLFCVHAASPPNRIYDTTLVIARE 399
                  MY+RLY NVLN+Y W+    A+NH+Y D+GLF +      +  +    +I RE
Sbjct: 321 AGGPGKGMYSRLYLNVLNQYPWVETCMAFNHSYTDSGLFGMFVTILDDAAHLAAPLIIRE 380

Query: 398 LANMAGKVGEIELRRAKTQLQSMLLMNLEARPVVFEDVGRQV-LATGKRKPPSFFINEID 222
           L N    V   E  RAK QL+S LLMNLE+R +  ED+GRQ+    G    P   I +ID
Sbjct: 381 LCNTVLSVTSEETERAKNQLKSSLLMNLESRMISLEDLGRQIQTQNGLYITPKEMIEKID 440

Query: 221 KITADDIVRVAQRMLSGRPAVAGRG 147
            +T  D+ RVA+R+L+G  +  G G
Sbjct: 441 ALTPSDLSRVARRVLTGNVSNPGNG 465


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 3/200 (1%)
 Frame = -1

Query: 680 SHIVIGLESCSHGDPDFVATCVLNXXXXXXXXXXXXXXXXXMYTRLYTNVLNRYHWMFNA 501
           ++I I +E  S   PD+    V+                    +RL T V  + H + N+
Sbjct: 262 ANIAIAVEGMSWKHPDYFTALVMQAIIGNWDRAMGASPHLS--SRLSTIV--QQHQLANS 317

Query: 500 -TAYNHAYGDTGLFCVHAASPP-NRIYDTTLVIARELANMAGKVGEIELRRAKTQLQSML 327
             +++ +Y DTGL+ ++  +    RI D      +  A +       E+ RAK QL++ L
Sbjct: 318 FMSFSTSYSDTGLWGIYLVTENLGRIDDLVHFTLQNWARLTVAT-RAEVERAKAQLRASL 376

Query: 326 LMNLEARPVVFEDVGRQVLATGKRKPPSFFINEIDKITADDIVRVAQRMLSGRP-AVAGR 150
           L++L++   + ED+GRQ+L TG+R  P      I +IT  D+ RVA  M+  +  AV+  
Sbjct: 377 LLSLDSTTAIAEDIGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEMIWDKDIAVSAV 436

Query: 149 GKLAHLPTFDEIQSNMSLNK 90
           G +  L  ++ I+S++S+N+
Sbjct: 437 GSIEGLLDYNRIRSSISMNR 456


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 1/124 (0%)
 Frame = -1

Query: 482 YGDTGLFCVH-AASPPNRIYDTTLVIARELANMAGKVGEIELRRAKTQLQSMLLMNLEAR 306
           Y D  L  V  + S P  I  T     + L +++  +    ++      ++  L   E  
Sbjct: 306 YSDASLLSVVISGSCPKAIKATASESFKALKSLSSNIPNDVVKSGIAMAKTKYLSAFE-- 363

Query: 305 PVVFEDVGRQVLATGKRKPPSFFINEIDKITADDIVRVAQRMLSGRPAVAGRGKLAHLPT 126
           PV    +    L +   K    FI+  DK+T   I +V   +L+   +    G L  LP 
Sbjct: 364 PVTLNAISASSLVSAS-KGSDAFISGFDKVTPASISKVVSSLLAKPASTVAVGNLDVLPY 422

Query: 125 FDEI 114
           +DE+
Sbjct: 423 YDEL 426


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
 Frame = +1

Query: 118 SSNVGRCASFPRPATAGLPLSIRCATLTMSSAVILSISLMKNEGGFLF----PVAKTC-- 279
           SS +   +S    + + +P+S   +T   SS+VI S S + +    L     PVA +   
Sbjct: 640 SSIISGSSSILSSSISTIPISSSLSTY--SSSVIPSSSTLVSSSSSLIVSSSPVASSSSS 697

Query: 280 -LPTSSNTTGRASKFMSNID*SCVLALLSSISPTLPAMFASSRAITS 417
            +P+SS+     S  +SNI  S +     S S  +P    SS  IT+
Sbjct: 698 PIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITA 744


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/66 (22%), Positives = 28/66 (42%)
 Frame = +1

Query: 259 FPVAKTCLPTSSNTTGRASKFMSNID*SCVLALLSSISPTLPAMFASSRAITSVVSYMRL 438
           +PV+ +   T+S +TG  +   +    SC L +  + +PT  ++  +    T   S    
Sbjct: 745 YPVSSSSTTTTSTSTGSVTTTSTTATASCTLPISYTSTPTTTSISGTCNGATFDASLYVC 804

Query: 439 GGEAAC 456
            G   C
Sbjct: 805 DGTVLC 810


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 77  VEHPFCSETYLIVFHRMWEDVQVFRDRLP 163
           +E PFCS  Y  V  R+   +Q+F D +P
Sbjct: 320 IEDPFCSFVYFYVSLRVPCSIQLFFDSVP 348


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 533 HSCRVVCTFLYQVHQPRTI 589
           H+C V+  FL  +H PRTI
Sbjct: 219 HTCSVLIIFLIWLHHPRTI 237


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 11  KITDSTSFG*IRRGKD*AFVLAVEHPFCSETYLIVF 118
           K T S S   ++     A    +EHP CS+T ++V+
Sbjct: 130 KSTGSPSEAGLKIDSQTALEYLMEHPICSKTKIVVY 165


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 563 YQVHQPRTIHHHPSSYSKRMLQRNLGHHENN 655
           Y + +  T H+H S +  R +Q +  +H NN
Sbjct: 84  YPISEQDTQHNHISDFPSRRMQLDGMNHSNN 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,200,709
Number of Sequences: 5004
Number of extensions: 64999
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)