Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14o12
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 116 2e-26
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 110 1e-24
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 101 5e-22
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 95 5e-20
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 84 1e-16
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395... 78 7e-15
08_02_0107 + 12494650-12495270,12507463-12508146,12508325-125084... 30 2.3
01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773 30 2.3
07_03_0409 + 17817046-17817126,17818320-17818523,17818744-178188... 29 3.0
06_01_0942 - 7242389-7243160,7243293-7243822,7245878-7246095,724... 29 4.0
09_02_0555 - 10588685-10592038 29 5.3
01_06_0706 + 31352513-31352813,31352906-31353363 29 5.3
10_02_0059 + 4785858-4786988 28 7.0
03_02_1029 - 13488535-13493037 28 7.0
07_03_0637 - 20175126-20175137,20176090-20176139,20176382-201763... 28 9.3
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133... 28 9.3
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 116 bits (279), Expect = 2e-26
Identities = 57/149 (38%), Positives = 93/149 (62%), Gaps = 2/149 (1%)
Frame = -1
Query: 554 YTRLYTNVLNRYHWMFNATAYNHAYGDTGLFCVHAASPPNRIYDTTLVIARELANMA--G 381
++RLY +LN YH + + +A+N Y +GLF +HA + PN + A EL +A G
Sbjct: 344 HSRLYLRILNNYHQIESFSAFNSIYNHSGLFGIHATTSPNFASKAVDLAAGELLEVATPG 403
Query: 380 KVGEIELRRAKTQLQSMLLMNLEARPVVFEDVGRQVLATGKRKPPSFFINEIDKITADDI 201
KV + +L RAK +S +LMNLE+R V ED+GRQ+L G+RKP F+ +++ IT +DI
Sbjct: 404 KVTQEQLDRAKQATKSAVLMNLESRVVASEDIGRQILTYGERKPIEHFLKDLEAITLNDI 463
Query: 200 VRVAQRMLSGRPAVAGRGKLAHLPTFDEI 114
A++++S +A G + H+P+++ +
Sbjct: 464 SSTAKKIISSPLTLASWGDVIHVPSYESV 492
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 110 bits (264), Expect = 1e-24
Identities = 55/147 (37%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Frame = -1
Query: 554 YTRLYTNVLNRYHWMFNATAYNHAYGDTGLFCVHAASPPNRIYDTTLVIARELANMA--G 381
++RLY VL +YH + + + +++A+ +GLF ++ +P + + + +EL +A G
Sbjct: 338 HSRLYLRVLTKYHTVESFSVFSNAFDRSGLFGIYLTTPSDFVAKAVDIATKELIAIATPG 397
Query: 380 KVGEIELRRAKTQLQSMLLMNLEARPVVFEDVGRQVLATGKRKPPSFFINEIDKITADDI 201
+V +IEL RAK S +LMNLE+R +V ED+GRQ+L G RKP F+ +D++T DDI
Sbjct: 398 QVTDIELARAKNSTISAVLMNLESRVIVAEDIGRQILTYGCRKPVDHFLQCMDEMTLDDI 457
Query: 200 VRVAQRMLSGRPAVAGRGKLAHLPTFD 120
A++MLS P +A G + +P ++
Sbjct: 458 TAFAKKMLSSPPTMASWGDVDKVPPYE 484
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 101 bits (243), Expect = 5e-22
Identities = 54/138 (39%), Positives = 87/138 (63%), Gaps = 2/138 (1%)
Frame = -1
Query: 545 LYTNVLNRYHWMFNATAYNHAYGDTGLFCVHAASPPNRIYDTTLVIARELANMA--GKVG 372
LY VLN Y + + +A++ Y ++GLF +HA + P+ + + AREL +A GKV
Sbjct: 399 LYLRVLNNYGQIESFSAFSSIYNNSGLFGIHATTNPDFVSSAVDLAARELHEVATPGKVT 458
Query: 371 EIELRRAKTQLQSMLLMNLEARPVVFEDVGRQVLATGKRKPPSFFINEIDKITADDIVRV 192
+ +L RAK +S +LM+LE+R V ED+GRQVL G+RKP +F+ +++IT +DI
Sbjct: 459 QEQLDRAKEATKSSVLMDLESRIVASEDIGRQVLTYGERKPIEYFLKTVEEITLNDISST 518
Query: 191 AQRMLSGRPAVAGRGKLA 138
A++++S +A G +A
Sbjct: 519 AKKIISSPLTLASWGDVA 536
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 95.1 bits (226), Expect = 5e-20
Identities = 45/143 (31%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Frame = -1
Query: 536 NVLNRYHWMFNATAYNHAYGDTGLFCVHAASPPNRIYDTTLVIARELANMA--GKVGEIE 363
++ N + + + A+ + +TG+F +H ++ + + REL ++A GKV + +
Sbjct: 356 HLANEFDQIRSIAAFKDVHSNTGIFGIHTSTDAAFVPKAIDLATRELTSLATPGKVDQTQ 415
Query: 362 LRRAKTQLQSMLLMNLEARPVVFEDVGRQVLATGKRKPPSFFINEIDKITADDIVRVAQR 183
L RAK +S +LMNLE++ ED+GRQ+LA G+RKP + +D +T DI +A++
Sbjct: 416 LDRAKATAKSAILMNLESKASATEDMGRQILAFGERKPVEHLLKAVDGVTLKDITALAEK 475
Query: 182 MLSGRPAVAGRGKLAHLPTFDEI 114
++S +A G + ++PT+D +
Sbjct: 476 IISSPLTMASHGNVLNVPTYDSV 498
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 83.8 bits (198), Expect = 1e-16
Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Frame = -1
Query: 497 AYNHAYGDTGLFCVHAASPPNRIYDTTLVIARELANMAGKVGEIELRRAKTQLQSMLLMN 318
A+N Y DTGLF V+A + P+ + D I +E++ ++ +V E ++ RA+ QL+S + ++
Sbjct: 396 AFNTNYKDTGLFGVYAVAKPDCLDDLAFAIMQEISKLSYRVTEEDVIRARNQLKSSIQLH 455
Query: 317 LEARPVVFEDVGRQVLATGKRKPPSFFINEIDKITADDIVRVAQRMLSGRP-AVAGRGKL 141
L+ V ED+GRQ+L G+R P ID + A + RVA R + + A+A G +
Sbjct: 456 LDGSTAVVEDIGRQLLIYGRRIPIPELFARIDAVDASTVKRVANRFIFDQDIAIAAMGPI 515
Query: 140 AHLPTFD 120
LP ++
Sbjct: 516 QGLPDYN 522
>01_06_0459 +
29538025-29538579,29539190-29539354,29539448-29539585,
29539685-29539836,29539949-29540057,29540281-29540379,
29541051-29541116,29541208-29541315,29541428-29541553
Length = 505
Score = 78.2 bits (184), Expect = 7e-15
Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Frame = -1
Query: 497 AYNHAYGDTGLFCVHAASPPNRIYDTTLVIARELANMAGKVGEIELRRAKTQLQSMLLMN 318
A+N Y DTGLF + + P+ +YD + +I +E +A +V E E+ RA+ QL+S LL++
Sbjct: 355 AFNTNYRDTGLFGICTIAQPDSLYDLSQLIMQEFRRLAFEVSETEVARARNQLKSALLLH 414
Query: 317 LEARPVVFEDVGRQVLATGKRKPPSFFINEIDKITADDIVRVAQRMLSGRP-AVAGRGKL 141
++ V E+ GRQ+L G+ P ID + D ++ A+ + + A+A G L
Sbjct: 415 IDGSTAVSENNGRQMLTYGRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIALAAVGPL 474
Query: 140 AHLPTFDEIQSN 105
+LP +S+
Sbjct: 475 TNLPELSWFRSH 486
>08_02_0107 +
12494650-12495270,12507463-12508146,12508325-12508472,
12508493-12508584,12508713-12509426
Length = 752
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 304 QLYLKMLEDRFWLQEKGNLPHFSSMKSIKSQLTTL 200
QLY K+ + FWL E L H S K + L TL
Sbjct: 174 QLYAKLSKCEFWLSEVKFLGHVISAKEVAVDLETL 208
>01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773
Length = 150
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +1
Query: 121 SNVGRCASFPRPATAGLPLSIRCATLTMSSAVILSISLMKNE 246
S+ GRC S P+P + LP+ I +L SA+++++S KN+
Sbjct: 98 SSYGRCFSRPQPPSMKLPV-ILFFSLVTGSALLVALSRGKNK 138
>07_03_0409 +
17817046-17817126,17818320-17818523,17818744-17818856,
17819446-17819491,17819741-17819787,17820250-17820325,
17820865-17820937,17821059-17821204,17821382-17821467,
17821734-17821873,17821944-17822083,17822171-17822221,
17823644-17823702,17823793-17823949,17824793-17824845,
17824936-17825034,17825876-17825990,17826075-17826197,
17826417-17826584
Length = 658
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +1
Query: 223 SISLMKNEGGFLFPVAKTCLPTSSNTTGRASKFMSNID*SCVLALLSSISPTLPAMFASS 402
S+ L FL + L N +G+ S ++ I C++ +L+ I +PA FAS
Sbjct: 396 SLELASPNNLFLSEASNMVLVMGPNMSGK-STYLQQI---CLIVILAQIGCYVPAQFASL 451
Query: 403 RAITSVVSYMRLG 441
R + V + R+G
Sbjct: 452 RVVDRV--FTRIG 462
>06_01_0942 -
7242389-7243160,7243293-7243822,7245878-7246095,
7246380-7246425
Length = 521
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 551 CTFLYQVHQPRTIHHHP 601
CT LY+ QPR +HH P
Sbjct: 210 CTPLYKKRQPRVVHHKP 226
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 361 SEEPKHNFSRCYS*T*RPDQLYLKMLEDRFWLQEKGNLPHFSSMKSI 221
SEE + R R QLY K+ + FWL E L H S K +
Sbjct: 342 SEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHMISAKGV 388
>01_06_0706 + 31352513-31352813,31352906-31353363
Length = 252
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +2
Query: 530 RHSCRVVCTFLYQVHQPR---TIHHHPSSYSKRMLQRNLGHHENNFLIQLQCVIVLVNPI 700
+H + VCTF H PR HH S ++ +LQ + ++ ++ V I
Sbjct: 51 KHIKQHVCTFALYAHDPRRQVETHHFVSRLNQDVLQCAVYDADDK-----HARLIGVEYI 105
Query: 701 LGTKVFRTLPAQFHR 745
+ K+F +LPA+ R
Sbjct: 106 VSRKIFDSLPAEEQR 120
>10_02_0059 + 4785858-4786988
Length = 376
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 361 SEEPKHNFSRCYS*T*RPDQLYLKMLEDRFWLQEKGNLPHFSSMKSI 221
SEE + R R QLY K+ + FWL E L H S K +
Sbjct: 155 SEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGV 201
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 361 SEEPKHNFSRCYS*T*RPDQLYLKMLEDRFWLQEKGNLPHFSSMKSI 221
SEE + R R QLY K+ + FWL E L H S K +
Sbjct: 725 SEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGV 771
>07_03_0637 -
20175126-20175137,20176090-20176139,20176382-20176392,
20176604-20176864,20176894-20176901
Length = 113
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 31 FWMN*ARKRLSLRPCGGASL 90
+W++ AR++L LR CGG +L
Sbjct: 5 WWLSQARRQLLLRSCGGVTL 24
>03_06_0352 -
33312443-33312652,33312747-33312854,33313224-33313397,
33313489-33313695,33313700-33313987,33314087-33314319,
33314450-33315263
Length = 677
Score = 27.9 bits (59), Expect = 9.3
Identities = 30/104 (28%), Positives = 44/104 (42%)
Frame = +1
Query: 55 RLSLRPCGGASLLFRDIFDCISSNVGRCASFPRPATAGLPLSIRCATLTMSSAVILSISL 234
RL+L GGA LLF +F+ S ++ + P A A R L +S+ S S
Sbjct: 9 RLALLAAGGAYLLFLLLFELPSVSISVSTASPAAAAAATTHRPRRRELEAASSSSSSSSS 68
Query: 235 MKNEGGFLFPVAKTCLPTSSNTTGRASKFMSNID*SCVLALLSS 366
FP ++ L SS R + S+ID S A ++
Sbjct: 69 PLRPLKTAFPSRRSPLAVSSIRFRRRNS--SSIDASAASAFAAA 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,910,871
Number of Sequences: 37544
Number of extensions: 428014
Number of successful extensions: 1116
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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