Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o12
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               31   0.009
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   1.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 278 QVLATGKRKPPSF--FINEIDKITADDIVRVAQRMLSGRPAVAG 153
           QVL  GK KP       NE+ K+   D+    QR+LSG  A+AG
Sbjct: 252 QVLEDGKLKPNKKVRISNEMSKVKVIDMTGPEQRILSGYHAIAG 295


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 584 TIHHHPSSYSKRMLQRNLGHHENNFLIQL--QCVIVLV 691
           T+ H  + YS  ++  +L  H  NFLIQ+   CV+++V
Sbjct: 194 TLSH--AEYSMLLVYFHLQRHMGNFLIQVYGPCVLLVV 229


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 728 EECEIPLYPGSDLPELSHIVIGL 660
           E+  + L+  SD P L HIVIG+
Sbjct: 127 EDGALILHYYSDRPGLEHIVIGI 149


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 728 EECEIPLYPGSDLPELSHIVIGL 660
           E+  + L+  SD P L HIVIG+
Sbjct: 127 EDGALILHYYSDRPGLEHIVIGI 149


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 172  PLSIRCATLTMSSAVILSISLMKNEGGFLFPV--AKT 276
            PLS+   T  M      S++L KNEG F   V  AKT
Sbjct: 1052 PLSMEKGTRPMIPDDNTSLALPKNEGPFRLNVETAKT 1088


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 423 VIYAIRRRSGMYTKQACIAVGVVVGCRVEHPVV 521
           +IY+ RRRS        +AV V+ G     P++
Sbjct: 144 LIYSRRRRSKRLAGLMIVAVWVLAGAITSPPLL 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,756
Number of Sequences: 438
Number of extensions: 4408
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)