Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o07
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   5.4  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   7.1  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   7.1  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   9.4  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 376 IYYESSDQRNNIVNLEHSEVKQTARRARMFCSYIKSNK 489
           I+YE   QR  +   +H +  +  +    F SYI + K
Sbjct: 711 IFYEREKQRKEVQERKHEQAIKDKKAFAQFASYIHAYK 748


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 576 SSYYNQNGAGNNSIVYGVAMFLHLYSSHALSIKKKIILNAYR*AKNXNXEF 728
           +S    NGAG ++++  ++  L + SSH  S   K ++   +  +  N +F
Sbjct: 28  TSIIGPNGAGKSNLMDAISFVLGVKSSHLRSTNVKELIYRGKILQRDNTDF 78


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 555 VMKQKALSSYYNQNGAGNNSIVYGVAMFLHLYSSHALSIKKKIIL 689
           ++K   +  +Y+QN   N+      +M    Y  H+   K+KIIL
Sbjct: 676 LLKNVCVYDFYDQNAISNSISESEPSMTASKYLCHSFVSKRKIIL 720


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 534 IKLMTMVVMKQKALSSYYNQNGAGNNSIVYGVAMFLHLYSSH 659
           IK  T +   QKA  S+Y++   G+N+ +  +  FL+L   H
Sbjct: 423 IKEETKLNADQKASESFYSKPAEGSNNFISDI-FFLNLAFHH 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,052,634
Number of Sequences: 5004
Number of extensions: 61306
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)