Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14o06
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0347 - 2509229-2509487,2509682-2509922,2510292-2510511,251... 35 0.066
03_06_0206 - 32353308-32353566,32353784-32354024,32354408-323546... 34 0.12
05_04_0189 - 18911654-18913207,18913310-18913528,18914034-189143... 31 0.82
02_05_0894 - 32585640-32585672,32585939-32585967,32586937-32588443 31 1.4
06_03_0536 + 21906583-21908037 30 2.5
04_04_0347 + 24564589-24565296 30 2.5
10_06_0036 - 9914606-9915561,9916287-9916368 29 3.3
02_05_0700 + 31018480-31019832 29 3.3
03_03_0199 - 15363680-15363739,15363879-15364070,15364154-153646... 29 4.4
05_03_0570 - 15587147-15587209,15588249-15588446 29 5.8
07_03_0708 - 20865786-20867153 28 7.6
>07_01_0347 -
2509229-2509487,2509682-2509922,2510292-2510511,
2510943-2511278,2512047-2512103,2512187-2512210
Length = 378
Score = 35.1 bits (77), Expect = 0.066
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = -3
Query: 395 PETGKCEDPSKKTKCPNLLCLGNNPDMKKEIENRFGKS*VMVSPK 261
PETGK EDP+KK C N LC + P K +I GK +M+ P+
Sbjct: 183 PETGK-EDPTKKGICSNFLC-DSKPGDKVQITGPSGK--IMLLPE 223
>03_06_0206 -
32353308-32353566,32353784-32354024,32354408-32354627,
32354981-32355316,32355632-32355688,32355787-32355810
Length = 378
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = -3
Query: 395 PETGKCEDPSKKTKCPNLLCLGNNPDMKKEIENRFGKS*VMVSPK 261
PETGK EDPSK C N LC + P K ++ GK +M+ P+
Sbjct: 183 PETGK-EDPSKNGVCSNFLC-NSKPGDKVKVTGPSGK--IMLLPE 223
>05_04_0189 -
18911654-18913207,18913310-18913528,18914034-18914367,
18914425-18914592,18914633-18914724,18914814-18914848,
18915377-18915441,18915565-18915669,18916373-18916434,
18916732-18916860,18918050-18918184,18918336-18918457,
18918808-18918965,18919215-18919372,18919447-18919780,
18919853-18919978,18920213-18920443,18920520-18920692
Length = 1399
Score = 31.5 bits (68), Expect = 0.82
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -1
Query: 505 GQHVRVLLAVIPIDAFTILHVPLQELLSRKFLLKRCVQRLENVKIHPKKQNVPICFALA 329
G+ +R LL D +T LH+ + + +++ V ENV + K +N PI FA+A
Sbjct: 189 GRLIRSLLEAQNADGYTALHLACRRGSAE--IVEAIVAYQENVDLLDKNENPPIIFAMA 245
>02_05_0894 - 32585640-32585672,32585939-32585967,32586937-32588443
Length = 522
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = -2
Query: 603 FRTSKAFSSQILPSFTSLHAALIMLSLPYALLLAS 499
F ++K ++Q++P+ T++HAAL LSL + ++S
Sbjct: 149 FASAKNLTAQLVPAMTNVHAALARLSLDKPVKVSS 183
>06_03_0536 + 21906583-21908037
Length = 484
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 223 FELLSSAHRQDLCFGETIT*LFPNLFSISFFMSGLLPRQSKLGHFV 360
F LL S QD+C + T NL S+ M+ LPR K G+F+
Sbjct: 401 FALLYSILNQDICLTSSST---ENLVSVIDEMASKLPRSLKFGNFL 443
>04_04_0347 + 24564589-24565296
Length = 235
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = -3
Query: 608 SSSVLQKPLAARSCHHLPHCMPPSSCFPYLMPCYWPARAGAPCSHPDRCFH 456
+SS+L AAR+ HH P P +P+ WPARA +P S PD H
Sbjct: 10 ASSLLAAASAARADHHSPAYAP----YPH-HHAPWPARAQSP-SAPDHGAH 54
>10_06_0036 - 9914606-9915561,9916287-9916368
Length = 345
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Frame = -3
Query: 719 PCPPTKCLVDCTTCFGLKIKLNKKPKFEPS-PVEVTPRSSSVLQKPLAARSCHHLPHCMP 543
P PPT L N P+ PS P P S+ V+ P A S P
Sbjct: 163 PLPPTSVASPPPPGVPLSFAPNAPPEVVPSVPPAAAPPSTPVVVVPAPATSPPMSMPATP 222
Query: 542 PSSCFPYLMPCYWP---ARAGAPCS 477
P + + PC P A + PCS
Sbjct: 223 PEAAAGGMAPCSAPPTAAMSPQPCS 247
>02_05_0700 + 31018480-31019832
Length = 450
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 118 TKQLKHPGTAHSHLSTFFLDCFLSFFNLAVF*GA-AFE 228
+KQ+ +P TA L FF DCF+S + +V A AFE
Sbjct: 164 SKQMANPTTAAGVLRLFFHDCFVSGCDASVLVAATAFE 201
>03_03_0199 -
15363680-15363739,15363879-15364070,15364154-15364605,
15364699-15365101
Length = 368
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 734 CSCKVPCPPTKCLVDCTTCFGLKIKLNKKPKFEPSPVE 621
CS +P P ++ C C+G+ + + P+PVE
Sbjct: 25 CSASLPAMPGARVIQCAQCYGVTRVGGRGRRRHPNPVE 62
>05_03_0570 - 15587147-15587209,15588249-15588446
Length = 86
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 267 RNHNLAFPKSIFNFFLHVWIIAKAKQIGTFCFFG--WIFTFSSLWTHLFRRNFRLRSSWS 440
R ++ +++ N+ VW+ A F G W FT SSL FR F L+SS S
Sbjct: 19 REETVSSVRNVNNWTGSVWMTPIAGAYIADAFLGRFWTFTVSSLIYLTFRYRFSLKSSVS 78
>07_03_0708 - 20865786-20867153
Length = 455
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -3
Query: 689 CTTCFGLKIKLNKKPKFEPSPVEVTPRSSSVLQKPLAARSCHHLPHCMPPSSC 531
CT CF P+ P+PV RSS+ + P C +LP P +C
Sbjct: 122 CTRCF---------PRPTPAPVLQPARSSTFSRLPCNGSFCQYLPTSSRPRTC 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,996,211
Number of Sequences: 37544
Number of extensions: 472551
Number of successful extensions: 1461
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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