Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o05
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 232 GASPATSPDTNRWSLTSITESSPR 161
           G SPA+SP     + TS T +SPR
Sbjct: 820 GNSPASSPRYLSAAATSSTSTSPR 843


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
          opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 3  WIVDVYPSIHVREHWRLVP 59
          W V     IH+ EHW + P
Sbjct: 23 WNVPAEELIHIPEHWLVYP 41


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 483 YQPRRYQSGHRTWKNN 436
           Y  +R QSG +TW N+
Sbjct: 896 YGMQRGQSGGQTWSNS 911


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 441 NNVRICDLIDT-VREQR*GFRFKRRPH 364
           NN++I  L D  +RE + GF F+R  H
Sbjct: 842 NNLQILHLEDNRIRELK-GFEFERLSH 867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,252
Number of Sequences: 438
Number of extensions: 4852
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)