Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o04
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    29   0.97 
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    28   1.7  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   9.0  

>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 24/71 (33%), Positives = 31/71 (43%)
 Frame = -1

Query: 646 YQNGNKSYDLSVLKSEDSLTSGSRFPVELPNIIDYFLITVGESFTMLGFGPLRTIDKSLS 467
           Y +GN  Y  ++L +  S T     PV+L  I  Y      +  T+L FG L T      
Sbjct: 46  YGSGNLRYIDALLLASGSCTQTGLQPVDLTQISIY------QQLTILLFGVLSTPITVNL 99

Query: 466 GHRLHKAYVYN 434
           G  L K Y YN
Sbjct: 100 GLTLFKLYFYN 110


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 397 MCHLYCGTDGL-RDCTHMLCAVCDLID 474
           +CH   G   + +DC H+LC  C  ID
Sbjct: 88  VCHNCKGNGHISKDCPHVLCTTCGAID 114


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 484 IDKSLSGHRLHKAY-VYNLSTRQCRSTDDTWSLRHLQSGSA 365
           I KSL  HRL + Y +Y    R+C    +TW LRHL+  S+
Sbjct: 111 IQKSL--HRLKEVYYIY----RECA---ETWQLRHLRVASS 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,478,015
Number of Sequences: 5004
Number of extensions: 76889
Number of successful extensions: 205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)