Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o02
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0004 - 9407954-9408007,9408219-9408386,9408441-9408542,940...    29   3.1  
07_01_0206 + 1484107-1484583                                           29   5.4  
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116...    28   7.1  

>10_06_0004 -
           9407954-9408007,9408219-9408386,9408441-9408542,
           9408710-9408934,9409889-9410047,9411768-9411900,
           9412827-9413758,9413842-9413987,9415863-9416082
          Length = 712

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +3

Query: 252 SCLNIIELIGKNYTIEFKNTSLLPMVNCSKAPFCLGVP*NFQSCYLHTSLNRYLPT 419
           S +  +++ G N T+E  N  +L +V    A   L    +F+  +++ S ++  PT
Sbjct: 239 SAILYLQMSGSNGTVEILNDKMLKLVGADSAVLLLAAATSFEGPFVNPSESKLDPT 294


>07_01_0206 + 1484107-1484583
          Length = 158

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 357 GVP*NFQSCYLHTSLNRYLPTKLCNAGELNCRYY 458
           G P +  S +L      Y  +  C+AGEL C +Y
Sbjct: 82  GTPADAMSYWLAEKAKYYYDSNYCSAGELGCTHY 115


>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
            1164082-1164240,1164663-1164797,1165116-1165268,
            1165358-1165479,1165599-1166541,1166677-1166728,
            1166873-1167963,1168058-1168384,1168479-1168559,
            1168649-1168717,1168809-1168937,1169038-1169121,
            1169210-1169275
          Length = 1321

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 438  LQHYITSLADSD*VKYVNNTIESFKERLNK 349
            L+ Y++S+ D+     ++N IE+FK  +NK
Sbjct: 1150 LEEYVSSIVDATLKSGISNQIEAFKAGINK 1179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,979,096
Number of Sequences: 37544
Number of extensions: 281863
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)