Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o02
         (765 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022693-1|AAY55109.1|  184|Drosophila melanogaster IP07178p pro...    30   3.0  
BT022606-1|AAY55022.1|  160|Drosophila melanogaster IP06878p pro...    30   3.0  
AE014298-1099|AAF46305.3| 1425|Drosophila melanogaster CG2212-PA...    30   3.0  
AE013599-1491|AAM68685.1|  189|Drosophila melanogaster CG30051-P...    30   3.0  

>BT022693-1|AAY55109.1|  184|Drosophila melanogaster IP07178p
           protein.
          Length = 184

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -1

Query: 702 NYFGFCYLVILLMIYFYESVFSD*ECRNVSKVSFYRYVDKFQSAFIYLVF 553
           N+  F +LV+LL +YF ES+ ++    N S  S  +Y D     FI  VF
Sbjct: 83  NFQVFLFLVLLLAVYFTESI-NEFAANNWSSFSRQQYFDS-NGLFISTVF 130


>BT022606-1|AAY55022.1|  160|Drosophila melanogaster IP06878p
           protein.
          Length = 160

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -1

Query: 702 NYFGFCYLVILLMIYFYESVFSD*ECRNVSKVSFYRYVDKFQSAFIYLVF 553
           N+  F +LV+LL +YF ES+ ++    N S  S  +Y D     FI  VF
Sbjct: 59  NFQVFLFLVLLLAVYFTESI-NEFAANNWSSFSRQQYFDS-NGLFISTVF 106


>AE014298-1099|AAF46305.3| 1425|Drosophila melanogaster CG2212-PA,
           isoform A protein.
          Length = 1425

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 654 YESVFSD*ECRNVSKVSFYRYVDKFQSAFIYLVFLGWTCYFMR 526
           Y ++FSD  C+ VSK         F    + L+F+ W  YF R
Sbjct: 15  YNTIFSDAWCQYVSKQITATVYMYFALVMMSLLFIAWFLYFKR 57


>AE013599-1491|AAM68685.1|  189|Drosophila melanogaster CG30051-PB
           protein.
          Length = 189

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -1

Query: 702 NYFGFCYLVILLMIYFYESVFSD*ECRNVSKVSFYRYVDKFQSAFIYLVF 553
           N+  F +LV+LL +YF ES+ ++    N S  S  +Y D     FI  VF
Sbjct: 88  NFQVFLFLVLLLAVYFTESI-NEFAANNWSSFSRQQYFDS-NGLFISTVF 135


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,191,971
Number of Sequences: 53049
Number of extensions: 528943
Number of successful extensions: 725
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)