Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14o02
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical...    29   4.8  

>Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical
           protein C55A1.5 protein.
          Length = 361

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 720 FFFLLRNYFGFCYLVILLMIYFYESVFSD*ECRNVSKVSF-YRYVDKFQSAFIYLVFLGW 544
           FF+  +  FG    ++ +++ FY S+++   C  +  V F YRY   F  + ++  F GW
Sbjct: 87  FFYSTQRPFGLKIEIVQVLMAFYTSIYASTIC--MLAVQFVYRYWAIFNESLLH-YFKGW 143

Query: 543 TCYF 532
              F
Sbjct: 144 RFLF 147


>AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical
           protein F25G6.2 protein.
          Length = 1143

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 252 FVMAIYNRK*LLALSWLCELY 190
           FV+A + ++  LAL WLCELY
Sbjct: 599 FVLADHKKRNDLALLWLCELY 619


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,451,857
Number of Sequences: 27780
Number of extensions: 308123
Number of successful extensions: 633
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)