Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14n23
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    27   0.13 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.6  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 217 KIVKRFSNHTTTQPNTDVKHAASNKYCSYINIQKNMILKLFWFTILHIEKL 65
           KI+   SN T    N    +  +N Y +Y N   N   KL+ + I++IE++
Sbjct: 313 KIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLY-YNIINIEQI 362


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 564 NPNMQNLISGLMTTTGGAQGVGEVPPGGINALLEVGQSLAQQMQAANPDLVEQLR 400
           N  +QN +      T   QGVG V  GG   L + G S +QQ       + +Q++
Sbjct: 731 NTQIQNPVGQGQDMTYSVQGVGVVNAGG--WLGQQGNSWSQQQVQQAQQVQQQMQ 783


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 220 LKIVKRFSNHTTTQPNTDVKHAASNKYCSYIN 125
           +KI+K+ S++   + N +     SNKY    N
Sbjct: 354 IKIIKQISSNIYERQNNEYIWIVSNKYQKIAN 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,158
Number of Sequences: 438
Number of extensions: 4210
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)