Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14n17
         (176 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   0.78 
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              20   3.1  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              19   7.3  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 0.78
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = -1

Query: 155 RQIGQNKEEP*ECQVQGSMLKVPVHPGHH 69
           R  G+  E+P  C + G    VP     H
Sbjct: 82  RSHGKEGEDPYRCNICGKTFAVPARLTRH 110


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 157 DAKSVKIKKNPENVKFKVRCSRFLYTLVITD 65
           D    KI    ENV+  + C+   ++ V  D
Sbjct: 46  DVNDGKINIEDENVQLYIECAMKKFSFVDKD 76


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -2

Query: 157 DAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEK 47
           D    KI  + ENV   + C+   + +V  +    EK
Sbjct: 46  DINEGKINMDDENVLLFIECTMKKFNVVDENANFNEK 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,890
Number of Sequences: 438
Number of extensions: 689
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 38
effective length of database: 129,699
effective search space used:  2593980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)