Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14n09
         (269 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   0.51 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   0.88 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   1.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   3.6  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    20   4.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   6.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   6.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   6.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   6.2  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              19   8.2  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.4 bits (48), Expect = 0.51
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -2

Query: 199 YCPPVCSPPDCRPICGPASPLLCQSSVPPTQR--CYPVNPCI 80
           +CP V   P C  IC P    +C+      ++  C P + C+
Sbjct: 53  FCPNVVPKPLCIKICAPG--CVCRLGYLRNKKKVCVPRSKCL 92


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 0.88
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 199 YCPPVCSPPDCRPICGP 149
           +CP V   P C  IC P
Sbjct: 53  FCPNVVPKPLCIKICAP 69


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 199 YCPPVCSPPDCRPICGPASPLL 134
           +C P C P    P     SPLL
Sbjct: 43  FCLPFCGPNVINPFFCDMSPLL 64


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.6 bits (41), Expect = 3.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 77  HIQLLHSNYVTQWSDFYSEFKKWL 6
           H Q L   Y  Q SD+Y +  +WL
Sbjct: 287 HTQRLLYVYA-QESDYYPDLNEWL 309


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = -2

Query: 199 YCPPVCSPPDCRP-IC--GPASPLLCQSSVPPTQRCYPVNPCINIYSCYT 59
           +C P C P    P  C   P+  LLC  +       + V   + ++S  T
Sbjct: 44  FCLPFCGPNVINPFFCDMSPSLSLLCADTRLNKLAVFIVAGAVGVFSSPT 93


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 2   FLTTF*IHYRNRS 40
           FLT F IHY+  S
Sbjct: 477 FLTFFFIHYKGTS 489


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 2   FLTTF*IHYRNRS 40
           FLT F IHY+  S
Sbjct: 463 FLTFFFIHYKGTS 475


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 2   FLTTF*IHYRNRS 40
           FLT F IHY+  S
Sbjct: 497 FLTFFFIHYKGTS 509


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 2   FLTTF*IHYRNRS 40
           FLT F IHY+  S
Sbjct: 446 FLTFFFIHYKGTS 458


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 166 DNPEVNRLVDN 198
           D+ +VNRLV+N
Sbjct: 92  DSEQVNRLVNN 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,493
Number of Sequences: 438
Number of extensions: 1516
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)